Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01284 ATGGAAGAAGAACAGGATCGAATTCTGCTTACTACTTTGGGCGTTAAATCCGCCAATCCTGAAGACATCGAACGCCGCGTTTTGGAAAAGGCTAGGAATGGTTCAGTTACTGTTACTGAAGCTGAAGGGAACACTGAGGAAAATCAATGCTCTACTACTTTACCTGAAACCCTTGATCCGTTATCTGAACTTCATCAGAAGTTGAGGGCAATAGAATTTGAAATTGGCGCGGTTTCTTCAACTATTCAACGGCCGAGAGATGTTGATAAGGACGGAGAAGGCGGTGATGTTGAAGAGGAGGATTTGGAGGAAGGGGTTGATGAGGGAAATGGCTCTGAACTTCAGCGTGTTCTTGCGGCTGATAGATTGAGAAGTCTTGAGAAAACGAAGGCGCAACTTGAGAAAGAGCTTTCTAGATTTTCTAAGGATAGTGATCCGAAAAGCATTGAGCGGAAAAAAGTTATATTTAGTTTAGTTAAGGAAGACCGAAGACCCAAGAAGATTAAAGATGATAGGAAAGTAAGCAAGAGACCTGCAAAGCGGTTTAAGATGGTCTCGTTTGATGATGATGCTGATTTCGATGCTGTGCTGGATGCAGCCTCTACGGGCTTTGTAGAAACTGAAAGGGATGAATTGGTTAGAAAAGGAATTTTCACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGCATTCAACAACCTGAAGCATCAACTAGTCATAATGCTGCTGAGCTGGAAAATACCAACAATCTTGCTTTGTCCAGTGTTGAAAGAGCTGCCAGATCATTTTCTCAGGCAGCAAGAGCTCGTCCAACATCCAAGCTGCTTGAGCCTGGAGAGTTACCGAAGCTTGATGCACCCACTATTCCTTTTCGCAGGCTCAAGAAACCACTACAATTACCCAAACCTCTAGACAGTGAGGGGGATCTGAATACAGATTCAAAAAAGAAAAAGAGGCGACCTTTGCCTGGCAGGAAATGGACCAAACGTGTTTCTTCTGAGGATAGACAACTGGAAGGAAGTGAAAATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAGTTTAGAAGGCCATGATGTTGAACTTTCTGAACACGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGAGAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAGTTGCACTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGGAAAACTATACAAGTATTATCATTTCTGGGTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTCACACTCTTGCGACAGTGGAAAAGGGAGGCAAAAAAGTGGTATCCTAAATTCCATGTAGAACTTGTACATGATTCTGCTCATGATCTGGCTTCTGAAAAGAAGCGAGCTGAATCTGATGGAACAGACTCTGAAAGCAATAATTCAAGCGACAATGATTATGAGAGAAGTGTACCATCTAGAAACCCAAGAAAGTGGAAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGTTGCTTGACTTTGAATGGGGTTATGCAGTTCTTGACGAAGGGCATAAAATAAAGAATCCAAATGCAGAAGTTACCCTAGCTTGCAAACAGTTACAAACTGTACACCGCATCATTATGACTGGTGCACCTATTCAGAACAAACTGAGCGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCTGTTGGCGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTTGTGCTGCGTGATTTAATTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCCCAACTTCCTAAGAAAACTGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCCAGTAGTGAAGTGGAAGAAATATTGGATGGAGGCAGGAATTCACTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCAGACCTACTTGAAAGGGAACATGCCTTCAGCGATCCAGATTATGGAAATCCAGATCGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTCAATGTTTGGAAGGAGCAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACTACTTCTGGTCATATTTACCGGAGAATGGATGGTCTCACTCCAGTAAAACATAGAATGGCTTTAATGGATGAATTTAATGCCTCAAGTGATATTTTTGTTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACAAATCTTACTGGTGCAGATAGGGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCGTGGCGAATTGGTCAGAAACGGGATGTGACAATATATAGATTAATCACTCGGGGAACTATTGAGGAGAAAGTATATCATCGTCAGATTTACAAACACTTTCTTACCAATAAGATCTTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAAGATCTTTTTGTATTGAATGTGGACGGAGAAGCTGGTTCAACAGAAACGTCAAATATTTTCAGTCAAATAGCTGAAGATGTAAATATTATTGGGACACATCAAGATACTCAGGATAATGAATCTAGTCATACTGCTGAATTGGGTTCTGAAGATGCTGGAGTTGATAATGATGGCAACTCACACGGAGGATCTTCAAGAGGAAAAGGTAAAGAGAAGATCGACAAAAGTAACGGAGCTGGTGAAGAAGCGAATATATTGAAAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCACGATTTGATCATGGATGCCCATGACGAGGAAAAGATGAGACTTGACCAGCAAGCTTCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGATTCGAACCAACGAAAGCGTCTCTGTTCCTACATGGACCGGAAGGTCAGGAGCTGCTGGTGCACCATCATATGTTCGGCGGAAGTTTGGCTCAACTGTGAATCCCCAGTTGCTAAATAATAGCAAAGCATCCAATGAATTACCTAGCAGCGGATCTAACAAATTCAATGGATATGCTGCTGGGGCGTCTTCTGGTAAGGCATTATCGTCTGCTGAAATATTATCTAAAATTCGAGGTAATCAAGAAAAAGCCGTCAGTGTTGGGCTTGAGCATCAGTTAGGAATGTCATCAACTTCCACAAATCATTCAAGAGATGTTAGAACATCCAGGGCACCTGAAAATTCATCTGGATTCCAGCCTGAAGTAATGATTAGAAAAATCTGCACCTTTTTCCAACAGAAAGGTGGCAGTTGTAGTTCATCCAGCATAGTTCAGTATTTCAAGGACAGGATCCCGCCAAAAGATCTTGCCCTGTTCAAGAATTTGTTAAAGGAAATAGCCACTCTGCAGAAAGGATCAAATGGTTCCTATTGGGTTCTGAGGCCAGACTATCAAGAATAG 3648 0.4197 MEEEQDRILLTTLGVKSANPEDIERRVLEKARNGSVTVTEAEGNTEENQCSTTLPETLDPLSELHQKLRAIEFEIGAVSSTIQRPRDVDKDGEGGDVEEEDLEEGVDEGNGSELQRVLAADRLRSLEKTKAQLEKELSRFSKDSDPKSIERKKVIFSLVKEDRRPKKIKDDRKVSKRPAKRFKMVSFDDDADFDAVLDAASTGFVETERDELVRKGIFTPFHKLKGFERRIQQPEASTSHNAAELENTNNLALSSVERAARSFSQAARARPTSKLLEPGELPKLDAPTIPFRRLKKPLQLPKPLDSEGDLNTDSKKKKRRPLPGRKWTKRVSSEDRQLEGSENANGCLDTSSCESLEGHDVELSEHESSYVTLEGGLKIPENIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELVHDSAHDLASEKKRAESDGTDSESNNSSDNDYERSVPSRNPRKWKTLINRVMRSESGLLITTYEQLRILGDQLLDFEWGYAVLDEGHKIKNPNAEVTLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASSEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSDPDYGNPDRSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKHRMALMDEFNASSDIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGEAGSTETSNIFSQIAEDVNIIGTHQDTQDNESSHTAELGSEDAGVDNDGNSHGGSSRGKGKEKIDKSNGAGEEANILKSLFDANGIHSAMNHDLIMDAHDEEKMRLDQQASQVAQRAAEALRKSRMIRTNESVSVPTWTGRSGAAGAPSYVRRKFGSTVNPQLLNNSKASNELPSSGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAVSVGLEHQLGMSSTSTNHSRDVRTSRAPENSSGFQPEVMIRKICTFFQQKGGSCSSSSIVQYFKDRIPPKDLALFKNLLKEIATLQKGSNGSYWVLRPDYQE 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01284 1215 FunFam DNA excision repair protein ERCC-6 655 933 - -
Vifa3g01284 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 904 IPR027417 -
Vifa3g01284 1215 Coils Coil 116 143 - -
Vifa3g01284 1215 CDD SF2_C_SNF 728 855 - -
Vifa3g01284 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 894 IPR001650 -
Vifa3g01284 1215 CDD CSB_WHD 1148 1214 - -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 928 971 - -
Vifa3g01284 1215 SMART helicmild6 761 844 IPR001650 -
Vifa3g01284 1215 Pfam Helicase conserved C-terminal domain 737 844 IPR001650 -
Vifa3g01284 1215 SMART ultradead3 383 606 IPR014001 -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 93 108 - -
Vifa3g01284 1215 CDD DEXHc_ERCC6 387 597 - -
Vifa3g01284 1215 Pfam SNF2-related domain 390 712 IPR000330 GO:0005524|GO:0140658
Vifa3g01284 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 648 IPR027417 -
Vifa3g01284 1215 FunFam Protein CHROMATIN REMODELING 8 365 647 - -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 1123 1145 - -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 34 54 - -
Vifa3g01284 1215 Gene3D - 360 647 IPR038718 -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 82 111 - -
Vifa3g01284 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 598 IPR014001 -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 264 346 - -
Vifa3g01284 1215 PANTHER SNF2/RAD54 FAMILY MEMBER 153 1196 - -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 474 503 - -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 298 317 - -
Vifa3g01284 1215 Gene3D - 654 942 IPR027417 -
Vifa3g01284 1215 MobiDBLite consensus disorder prediction 37 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01284 Vifa-Chr3 329391237 329396864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01284 380 897 RAD5 or RAD16-like Gene Family AT1G02670 23.283 4.10e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g01284 SNF2_N 1.6e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01284 K10841 - gmx:100820025 1848.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01284 3 329391237 329396864 Vifa3g01284 3 329391237 329396864 ECH