Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01281 ATGATGAAATTAGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCATCATCCACACATGCATGAAACATGGGATTACACAATCATTACAAATGACTTATTATTGCCACCTCCAATCCAAACAAATCCTTATCCGAAACCACCAACACAAAGCCACTCCTTAAACTTAGGACAGAATAATGAGATATGTGATTGGGTTGAACACATTACTAAACACTTAGTCGAAGATCACTTACCACAAAACACTTGTGATAATCATACTATTCATAATCTTCAGACTCAAACAAACACCTTAGATTTAGTTCATAATCATAACCATAATCATAATAATAATGATTATGAGTGTGATCAAGGGTTGAATTTGATAACCCTTTTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCTTGATGAAGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTATAAAACATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAGGCAATGATAAGTAGAGTCATGAATTCATGGCTTGGAGTTTGTTCTCCTTTGATTGATCATAGAACCATTCACTCTTCACTCCAAGTCTTCAACAATATTTCACCTTTCATCAAGTTTTCACATTTTACTTCAAACCAAGCGATTCTCGAAGCAGTGAATCGTTGTAGTAACATTCATATAGTTGATTTGGATATCATGCAAGGTCTTCAATGGCCGGCTTTTTTTCACATACTCGCGACTCGGATGGAGGGTCGACCTAAGGTTCGAATGACGGGGATGGGAGCGTCGATGGAGCTTCTTGTTGAGACGGGGAAAAATCTCTCGAATTTCGCGAGAAGGCTTGGTTTGTGTTTGGAGTTTTACCCTCTAGCATGTAAGTTTGGTGAAGTTGTTGATGTTTCCATCTTGCAAATTAGGCCTAACGAGACACTTGCAGTGCATTGGTTGAAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAGGAATTGGAACCAAGAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTCTTGGACCGTTTTGTCGGTTCGTTACATTACTATTCTACACTTTTTGATTCTCTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTAGAACATGATCTTCTCTCTAAAGAGATTAACAATATATTGGCCATAGGAGGACCTAAGAGGAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGTTGCAAGCAATAGTTTTGAGCAAGTCCCAATGAGTGGTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTTTTCACCAGCTCATGGTTATAGTGTTGCTCAAGTTGATGGTATGTTAAGGCTTGGTTGGAAGGATACTAGTTTGTACACAGCTTCTTCGTGGACTTGTAGAGATTCTAGGTAG 1455 0.3773 MMKLGFEVLHANPNMIHHPHMHETWDYTIITNDLLLPPPIQTNPYPKPPTQSHSLNLGQNNEICDWVEHITKHLVEDHLPQNTCDNHTIHNLQTQTNTLDLVHNHNHNHNNNDYECDQGLNLITLLMECAVAISVENLDEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNSWLGVCSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCSNIHIVDLDIMQGLQWPAFFHILATRMEGRPKVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPLACKFGEVVDVSILQIRPNETLAVHWLKHSLYDSTGPDWKTLRLLEELEPRIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHDLLSKEINNILAIGGPKRSGEEKFRLWRSELVASNSFEQVPMSGNSMAQAQLILNMFSPAHGYSVAQVDGMLRLGWKDTSLYTASSWTCRDSR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01281 484 ProSiteProfiles GRAS family profile. 113 479 IPR005202 -
Vifa3g01281 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 100 475 IPR005202 -
Vifa3g01281 484 Pfam GRAS domain family 122 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01281 Vifa-Chr3 328633939 328635393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01281 77 481 GRAS Transcription Factor Family AT3G54220 50.485 9.26e-132 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa3g01281 GRAS 1.9e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01281 - - mtr:25484238 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01281 3 328633939 328635393 Vifa3g01281 3 328633939 328635393 ECH