Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01279 ATGGATTCTGCGAGGAGTTGGCTTCAGAAGTTGCAGCCTCGTGATAGAACCAAGATAAAGAAGAGGGACGGAGATGGTAATAATGATGGAAATGGAGATTTGATTACACCTGTGGATGAAGGAGCTCTTTCTGATGTCACCAAACAGAAGGTTGCGGCGGCAAAGCAGTATATTGAAAATCATTACAAGGAGCAAATGAAGAATCTTCAGGAGAGGAAGGAGCGTCGGACCGTCTTGGAAAAGAAGTTGGCTGATGCTGATGTGTCTGAGGAGGATCAAAACAACTTGCTTAAATTTTTAGAGAAAAAGGAAACCGAATATATGCGTCTTCAGAGGGCCAAGATGGGTGTTGATGATTTTGAGTTATTGACTATGATCGGAAAAGGTGCATTTGGAGAGGTTAGAGTCTGCAGAGAGAAGACTACTGATCATGTATTCGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTCAAAGCGGAAAGGAATGTACTCGCTGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAAGATGACGAGTATCTTTATCTTATTATGGAGTATCTACCGGGTGGAGACATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGACGAAGCCAGATTTTATGTTGGAGAAACTGTTCTGGCTATTGAATCTATACACAAGCACAATTATATACATAGGGATATTAAGCCTGACAACTTATTGCTCGATAGATATGGACACTTGAGACTGTCTGACTTTGGACTTTGTAAACCATTAGATTGTAGTACGCTGGAAGAAAAAGATTTTTCTATGGGTCAGAATGTGAATGGGTCTACACGGAATGAAGAGCGTTCAGCTCCAAAACGCACACAACAAGAACAACTTCAAAACTGGCAAAAGAATAGGAGGACACTTGCTTATTCTACTGTTGGTACACCGGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGGTATGCGATGGAATGTGATTGGTGGTCACTTGGCGCTATCATGTATGAAATGTTGGTAGGATATCCTCCTTTTTATTCTGATGATCCGATGACAACATGTAGGAAGATAGTGAACTGGAAATCTCACTTGAAATTTCCCGAGGAAGCTGGGCTATCGCCAGAGGCTAAAGATCTTATCAGTAGACTCTTATGTAATGTCAACCAGAGGCTGGGATCAAAAGGTGCAGATGAAATAAAGGCTCATCGGTTCTTCAAAGGTGTTGAATGGGATAAACTATATCAAATTGAAGCTGCATTTATACCCGAGGTCAATGATGAATTAGATACTCAGAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAGTCCGACCGTCCTCAAAAGCTGGTCCATGGAGGAAGATGCTTTCATCTAAGGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTAAACGATTATCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACCCTCCAAATCAAAGAGACCATCTATTAAGTCGCTTTTTGATTCCGATTCAGAGACGGTTGAGGTTTCTGATACGTCTCCAAGTGATCGGCCTCCTCAAGGAAGCTTTTTAAACCTCTTGCCACCCAGGTTAGGGGCATCTCATAGTGAAAGGAATCTTTCTCATAAATCCTAA 1677 0.4091 MDSARSWLQKLQPRDRTKIKKRDGDGNNDGNGDLITPVDEGALSDVTKQKVAAAKQYIENHYKEQMKNLQERKERRTVLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRAKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVFAMKKLKKSEMLRRGQVEHVKAERNVLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEEKDFSMGQNVNGSTRNEERSAPKRTQQEQLQNWQKNRRTLAYSTVGTPDYIAPEVLLKKGYAMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVNWKSHLKFPEEAGLSPEAKDLISRLLCNVNQRLGSKGADEIKAHRFFKGVEWDKLYQIEAAFIPEVNDELDTQNFEKFDESDSQVRPSSKAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKPSKSKRPSIKSLFDSDSETVEVSDTSPSDRPPQGSFLNLLPPRLGASHSERNLSHKS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01279 558 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Vifa3g01279 558 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Vifa3g01279 558 CDD STKc_NDR_like 118 482 - -
Vifa3g01279 558 CDD MobB_NDR_LATS-like 54 115 - -
Vifa3g01279 558 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01279 558 MobiDBLite consensus disorder prediction 514 534 - -
Vifa3g01279 558 MobiDBLite consensus disorder prediction 9 28 - -
Vifa3g01279 558 MobiDBLite consensus disorder prediction 499 513 - -
Vifa3g01279 558 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 471 - -
Vifa3g01279 558 MobiDBLite consensus disorder prediction 498 558 - -
Vifa3g01279 558 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vifa3g01279 558 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vifa3g01279 558 MobiDBLite consensus disorder prediction 281 303 - -
Vifa3g01279 558 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Vifa3g01279 558 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa3g01279 558 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa3g01279 558 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01279 558 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01279 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vifa3g01279 558 SUPERFAMILY Protein kinase-like (PK-like) 94 469 IPR011009 -
Vifa3g01279 558 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Vifa3g01279 558 Coils Coil 62 82 - -
Vifa3g01279 558 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Vifa3g01279 558 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01279 Vifa-Chr3 328561091 328572734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01279 1 529 AGC Kinase Gene Family AT2G20470 77.528 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vifa3g01279 Pkinase 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01279 K08790 - gmx:100820558 960.288