Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01277 ATGGATCATGTGATTGGTGGGAAGTTTAAACTAGGAAGGAAAATTGGGAGTGGCTCTTTTGGAGAGCTCTATTTAGCTGTTAATATACAAACTGGAGAGGAGGTTGCTGTTAAGCTGGAATCTGTGAAGACGAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAATGGTTTGGAGTTGAGGGAGAGTACAATGTCATGGTTATTGATCTTCTTGGACCAAGTCTAGAGGATTTATTCAATTATTGTAACCGGAAATTTACATTGAAGTCAGTGTTGATGCTCGCCGATCAATTAATTAATAGAGTTGAATACATGCATTCACGAGGCTTTCTTCACCGTGACATAAAGCCAGACAATTTTCTGATGGGCCTCGGACGTAAAGCAAATCAAGTGTACGCCATTGACTACGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCACAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATCGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCATGGCAGGGACTGAAGGCTGGAAACAAAAAACAAAAATATGATAAAATAAGCGAGACAAAAGTGTCAACTCCGATAGAGGTGCTCTGTAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGATCATTGAGGTTTGAGGACAAGCCAGATTATTCATATTTAAAGAGACTTTTCAGAGATCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTGTATTGAAATATCCACAAATTGGTAGCAGCTCAAGAGGGCGGCATGCCAGTGGCAAGGCAGCTATGCAAGCAGCAGCTACACCTGCACACAGACCAGAAAAGATCCCAGTTGGGAGAGAGTTTCGAGAGAAGTTATCCGGTGCTGTTGAAGCATTCTCCCATAGGAACCGCCCAAGTTCTACTCCTCATCATCATCACGGTGAACATGTCAGACATAGAACTTATGACGAGGCAGCAATGCACAAGGAAATGCACTATGCCCAACACAATTCAACTCGATATGGCAGCAATTCGAAAAGAGCAATGGTAACATCATCAAACAGGACGAATTCCTCAGGCGACCATACTAACAGGATGGCCTCAGGTGGTGGGGGCCGTCCATCTGCCGCACATAGAGTTCAACCTGTTTACGAGACCAGACAAGCAGCTTTTGCACGCAACGGATCTTTGAGAGGCCACCGTGATGATCCTCTGAGGAACTTTGAACTCCTCGCTATCAGGAAGTAA 1380 0.4362 MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGSSSRGRHASGKAAMQAAATPAHRPEKIPVGREFREKLSGAVEAFSHRNRPSSTPHHHHGEHVRHRTYDEAAMHKEMHYAQHNSTRYGSNSKRAMVTSSNRTNSSGDHTNRMASGGGGRPSAAHRVQPVYETRQAAFARNGSLRGHRDDPLRNFELLAIRK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01277 459 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01277 459 CDD STKc_CK1_delta_epsilon 8 282 - -
Vifa3g01277 459 PANTHER CASEIN KINASE-RELATED 9 366 - -
Vifa3g01277 459 MobiDBLite consensus disorder prediction 380 424 - -
Vifa3g01277 459 MobiDBLite consensus disorder prediction 380 409 - -
Vifa3g01277 459 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01277 459 FunFam Casein kinase 1-like protein 1 330 - -
Vifa3g01277 459 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa3g01277 459 FunFam Putative Casein kinase I 1 85 - -
Vifa3g01277 459 Gene3D Transferase(Phosphotransferase) domain 1 1 330 - -
Vifa3g01277 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g01277 459 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01277 459 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01277 Vifa-Chr3 328044648 328048929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01277 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 1.47e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa3g01277 Pkinase 3.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01277 K08960 - gmx:100789031 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02712 5 903858127 903863646 Vifa3g01277 3 328044648 328048929 PCT