Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01269 ATGAAGTTCCTTCGCTCAGGGGAACAATTGGGAGCAACAGATGCAACATACCCTTCCTCTCAATCTCTTATAACCAACGACTTCTTCTCAGCAAGCGCCCATTCTTTCCTCCCCGGAAAACTCGATCTCAAACCAGACACCGGCAATATAGAAGAAGCAGAATTATCTTTGCGTGAAAGTGGCGTATTGAACTATGAGGAAGCTAGAGCGCTGCTAGGAAGATATGAGTATCAGAAAGGAAATTTAATACCTGCTTTACATGTATTTGAGGGAATTGATATAGCTGTTGTGACTCCTAAGATCAAAATTGCGCTTTCTAGAAATGGAGAACGACGAAAGAGACATTCTCATAATCACGGTGAACCGGAAATGTCTATACATTCTGCTGGATTATTGTTGGAAGCACTCTTCTTAAAAACTAAATCTTTGCAGGTTCTTGAAAGGTTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTCGAGCTGCTTCCGGAGTTGTGGAAGCTTGCTGATTGTCCGCGTGAAGCTACTTTGTCTTACCGGAGAGCACTTCTTCATCAATGGAATCTTGATGCAGGGACTACAGCAAAGATTCAAAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGAGAAGCAATGCCCCCTAATCTGCGTTCCCAAATGGACGGCTCGTTTGTACCAGGAAACAACATAGAAGAGGCCATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTTAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCGTTTGCACTGTCTATTTCGGGAGGCCTGTCAAGTTTAGCCGACCATTTGGAAGAATTGCTCCCCGGGACTATTCATCGAAGTGAAAGATTCCATGATCTAGCTCTTTGTTATTATGGAGCAGATAAGGATTCAACGGCACTTGATCTTCTAAGAAAATTGTTGAATGGTAGAGAAAGGCCAAAACATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTAGTGAGAATCCTACACTTGCAGAAGAAGGGGTAAGCTTTGCTCAGAAAGCGGTTGAGAGCTTGGATGGAAAATGTACACAGTTAGAAAATGTTACGAAATTATATCTTGGTGTTTCGTTATCAGCACACTCGAAATTGGCCGTCTCTGATTCTGAGAAGTTTAAGAGACAATCTGAGGCACTTCAAGCTTTGGAAACTGCTGGTAGAATGACCAGAATGATAGACCCGCTAGTACTATATCATCTCAGCTTAGAATATGCAGAACAAAGGAAGTTGGATGATGCGCTTTATTATGCAAAGTACGTCGTTAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTACTATTGGCACGAATATTATCTGCTCAAAAACAGTTTTTGGATGCGGAATCTATTATTAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTGCGAACAAAAGCTAAAATTCAAATTGCACAGAACCAGTTAAAGAATGCCATTGAGACATACACTCAGCTTCTTGCAGTTCTTCAAATTCAGAGAAAGAGTTTTGGTTCTTGGAAGAAGTTATATAAGGACAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCCCATGTATATATCAGTCTTTCCCAATGGCACGATGCAGAGGCATGTCTTTCAAAATCTAAGGCCATCAAACCATACTCCGCTTCTGGATGTCATGCTCTAGGTATAATGTATGAAGCAAAGGGCCTATACAAAGAAGCTCTAAAATCTTTTGGTGATGCTTTAAACATTGATCCAGACCATGTTCTCAGCTTAATCTCCACAGCTAAAGTACTTAGACATTGCAGTAATAAATTAAATCCTGCAGTCAGAAGTTTTTTGACGGATGCACTACGACACGATAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTCTTTCACAAAGCCGAGGGTACGATATCATCATTAGTTGAAGCTGCAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGATGA 2142 0.4062 MKFLRSGEQLGATDATYPSSQSLITNDFFSASAHSFLPGKLDLKPDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLIPALHVFEGIDIAVVTPKIKIALSRNGERRKRHSHNHGEPEMSIHSAGLLLEALFLKTKSLQVLERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHQWNLDAGTTAKIQKEFVVFLLYSGGEAMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSISGGLSSLADHLEELLPGTIHRSERFHDLALCYYGADKDSTALDLLRKLLNGRERPKHVPGLLMASKICSENPTLAEEGVSFAQKAVESLDGKCTQLENVTKLYLGVSLSAHSKLAVSDSEKFKRQSEALQALETAGRMTRMIDPLVLYHLSLEYAEQRKLDDALYYAKYVVKLEGGSNVKGWLLLARILSAQKQFLDAESIINAALDQTGKWDQGDLLRTKAKIQIAQNQLKNAIETYTQLLAVLQIQRKSFGSWKKLYKDNRDRARNLEVEIWHDLAHVYISLSQWHDAEACLSKSKAIKPYSASGCHALGIMYEAKGLYKEALKSFGDALNIDPDHVLSLISTAKVLRHCSNKLNPAVRSFLTDALRHDRLNASAWYNLGLFHKAEGTISSLVEAAECFQAAQSLEESTPLEPFR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01269 713 Coils Coil 513 544 - -
Vifa3g01269 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Vifa3g01269 713 SUPERFAMILY TPR-like 513 704 IPR011990 GO:0005515
Vifa3g01269 713 Gene3D Tetratricopeptide repeat domain 564 709 IPR011990 GO:0005515
Vifa3g01269 713 Pfam Tetratricopeptide repeat 602 634 IPR019734 GO:0005515
Vifa3g01269 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Vifa3g01269 713 SUPERFAMILY TPR-like 419 540 IPR011990 GO:0005515
Vifa3g01269 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Vifa3g01269 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Vifa3g01269 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Vifa3g01269 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Vifa3g01269 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Vifa3g01269 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Vifa3g01269 713 Gene3D Tetratricopeptide repeat domain 258 563 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01269 Vifa-Chr3 325231477 325234602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01269 1 713 Calmodulin-binding Proteins AT4G28600 56.768 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01269 K21843 - gmx:100792009 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01269 3 325231477 325234602 Vifa5g02720 5 905471664 905475703 PCT