Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01259 ATGGTAAACGTTTTCTCTTTTGGTTTGGCTAAGGATCATGAATATGAAAGACAAGAGTTACAGCATGAGACTTGTGATTTGCTTGTGTTTTCAGCCACAGATGATGTAATGGCTTTCAAAGAGGCTGTTGAAAAAGACAACCATGATGTCAATGAAGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCCCTCATGATTGCTTCCTTATTTGGAAGCAAGGCTGTATTGTCTTATATTCTCGAAACCGGCCATGCCGATGTTAACCAAGCGTGTGGTTCGGATAGGGCTACTGCTCTTCATTGCGCTGTTTCTGGTTGTTCTGCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCCAACAGTAACCGGTGCAGTGACTTGATTGTCATGATGTCTAATTGTATCTCCGGTTCGAGGGAAGAGGAAACTACAAGCCATACTAGAAGCCTTGTTCAAGGGCTTATACTCATGAATGGACCGAATGTCCCTTTGTTCATCCGGGGGGAAAACGCAAGGCGCCGCGATCCGATGATATATCATTACACCTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTGTAAGGATGAAACCGAATGCTCCCGAAGAGTCTGCTTTTTTGCACATAAACCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCGATATCCTATTCAAATTCACCTAG 846 0.4456 MVNVFSFGLAKDHEYERQELQHETCDLLVFSATDDVMAFKEAVEKDNHDVNEVGLWYGRRIGSKEMGYEERTPLMIASLFGSKAVLSYILETGHADVNQACGSDRATALHCAVSGCSAASAEVIKLLLDASADVNSVDANSNRCSDLIVMMSNCISGSREEETTSHTRSLVQGLILMNGPNVPLFIRGENARRRDPMIYHYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLVRMKPNAPEESAFLHINRGASPIVCFYWFCFAFTDILFKFT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01259 281 SMART c3hfinal6 200 226 IPR000571 GO:0046872
Vifa3g01259 281 SUPERFAMILY Ankyrin repeat 32 142 IPR036770 -
Vifa3g01259 281 Gene3D - 21 172 IPR036770 -
Vifa3g01259 281 PANTHER UNKEMPT FAMILY MEMBER 30 137 IPR045234 -
Vifa3g01259 281 Gene3D - 194 268 - -
Vifa3g01259 281 ProSiteProfiles Zinc finger C3H1-type profile. 205 227 IPR000571 GO:0046872
Vifa3g01259 281 Pfam Ankyrin repeats (3 copies) 61 138 IPR002110 GO:0005515
Vifa3g01259 281 ProSiteProfiles Ankyrin repeat profile. 104 139 IPR002110 GO:0005515
Vifa3g01259 281 SMART ANK_2a 69 99 IPR002110 GO:0005515
Vifa3g01259 281 SMART ANK_2a 104 136 IPR002110 GO:0005515
Vifa3g01259 281 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 225 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01259 Vifa-Chr3 324974936 324975969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01259 183 242 C2H2 Transcription Factor Family AT5G12850 75.000 4.28e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g01259 Ank_2 2.6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01259 - - lja:Lj0g3v0064839.1 272.707