Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01256 ATGGCCTCAAAAGCTTTAACCACTGGTTCTCACTCCCGAAATGGATACCGTTTCTCAGTCTTTGATGACTCAGATGAGGAAAATGGAGACTGCAGTATTCAACAGCAAAGGAAACACAATGATCATGCTTTCTCTTTGGCCGGAAGCGTAGCTAATAAGGATTTTGAAGAGCATAAATCATTCAACTATAATGAAGAGAAAGGGAAAGGAAATCAAGAAAAGAGAAGTCTTATGAGCAATGACATAGAAGAAGATGAATACCTTTTGGCTGAGTCGAGGCAACCATTATGTCGTAAGGTTCCAATAGCTTCGAGCCTAATCAATCCATACCGCATAGTCATAGTCATGCGTCTCGTTGTCCTAGTTTTCTTCTTTCACTTCCGCATCACAACTCCTGTGCATGATGCATTTGCCTTATGGATAATCTCCGTGACCTGTGAAATATGGCTTTCTTTGTCTTGGGTAATAGATCAATTCCCCAAGTGGTTCCCCATGACTCGCGAAACTTACTTGGAGCGCTTGTCCATGAGATTCGAGCGCGAAGGGGAGCCGAACCTTTTAGCCGCAGTTGATGTCTTTGTTACCACTGCAGACCCTTTGAAGGAACCACCTATTATAACAGCAAACACAGTTCTATCAATCTTGTCTGTTGATTATCCCGTTGACAAAGTTAGCTGCTACGTCTCCGATGACAGTGCTTCTATGCTTCTCTTTGATACTTTGTCACAAACTTCTCAGTTTGCAAGAATATGGATTCCGTTTTGTAAAAAGTATAACATTGAGCCAAGAGCTCCCGAGTCTTATTTTTCTCATAAAGTTGATTACTTGAAAGACAAGGTACTTCCAACATTTGTAAAGGACCGCAGAGCTATGAAGAGAGAGTACGAAGAATTCAAGGTGAGAATTAATGTACTTGTCGCAGAGTCTCAGAAAAAACCAGAAGAGGGGTGGGTGCTGCAAGATGGTACTCCATGGCCTGGGAATAACACTGACAATCATCCAGGAATGATTCAGGTGTGTCTTGGAAGTGCTGGGGCTGTAGACAATGAAGGCAAGTCACTGCCACGGCTTGTGTATGTTTCGCGCGAGAAATGTTCTGGCTATCAACACCATAACAAAGCTGGAGCAATGAATTCTCTGCTTCGAGTTTCTGCTGTGCTTAGCAATGCACCTTTTGTGTTGAATCTGGATTGTGATCAATACATCAATAATAGCAAGGCTATTAGGGAGGCTATGTGCTTTCTCATGGACCCTCTACTTGGGAAGAAGACCGCTTATGTCCAATTTCCGCGAAGGTTTGATGGCATCGACGACAATGATAGATATGCTAATCACAACACTGTATTCTTTGATATCAACATGAAATGCCTTGATGGAATTCAAGGTCCAGTTTATGTTGGTACTGGATGTGTGTTCAACAGACAAGCATTATATGGCTATAAGCCACCAACCGAGAAAAGGCAAAACACGGGCTTTTCATGCTGCTGTTGTTGTTCTGATAACTGTCGTTCAGAATTTGATGTTGAAGAGATTGATGGTTTTCATGAAGACAATAAGGAACAAGAGGAATCATCCTTCATGTCCCTTAAATTTTTTGAGAAAAAGTTCGGAGAATCGCCGGTTTTCATTGCTTCTGCCTTGATGGAAGATGGTGGACTTCCAAAAGGCACTAATACGCGAATACTGGTGAAAGAAGCTATTCATGTTATTAGTATTGGATATGAGGAGAAAACTGAATGGGGCAAAGAGATAGGGTGGCTTTATGGTTCAATCACAGAAGACATCTTGACAGGGTTTAACATGCATTGCAGAGGATGGAAATCAGTATACTGCATGCCTAAAAGAGCGGCTTTTAAAGGATCTGCTCCTATAAACCTATCAGATAGATTACATCAAGTTCTGAAATGGGCTTCGGGTTCTACTGAGATTTTCTTTAGTGGTTATTGTCCATTGTGGTATGGCTATAGTGGAAAACTTAAATGGCTTCAAAGGCTCGCTTACACGAACCATATCGTTTATCCGTTCTCTTCCATCCCTCTTTTGGTATACTGCATAATTCCGGCTATCTGTCTTCTGACCGGAAAATTCATCCTCCCCACTCTGACAAGCCTTGCAAGCATTTGGTTAATGACTCTATTTATTTCGATCATTCTAACTTGTGTGCTAGAGCTTCGTTGGAGTAAGGTTAACATTCAGGACTGGTGGTGCAACGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCACACCTTTTTGCAGTGTTTCAAGGCCTCCTTAAAGTTGCAGGATTAAACACTAATTTCACTGTGAGAACGAAATCAACAGACAGCGCTGCATTTGGACAGCTCCATCTCTTCAAGTGGACAACTCTTCTCATCCCACCAACAAGTATTGTAATTTTGAATATGGTTGGAATTGTGGCTGGAGTCTCTGAAGCTATTAATAGTGGCTATAACTCATGGGGACTTTTATTTGGGAAGGTTTTTTTCTCTTTCTGGGTTATTGTTCACTTGTATCCTTTCCTCAAAGGTCTGATGGGAAGGCAAAACAAAACTCCTATCATAGTGGTTTTGTGGGCAACACTTCTAGCGTTGATTTTCTCGATGATATGGGTGCGAATTGATGTTTTCTTGCCCAAGAAAACAGGTCCTGTACTTTCACAATGTGGGATAGAATGTTAA 2679 0.4166 MASKALTTGSHSRNGYRFSVFDDSDEENGDCSIQQQRKHNDHAFSLAGSVANKDFEEHKSFNYNEEKGKGNQEKRSLMSNDIEEDEYLLAESRQPLCRKVPIASSLINPYRIVIVMRLVVLVFFFHFRITTPVHDAFALWIISVTCEIWLSLSWVIDQFPKWFPMTRETYLERLSMRFEREGEPNLLAAVDVFVTTADPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDSASMLLFDTLSQTSQFARIWIPFCKKYNIEPRAPESYFSHKVDYLKDKVLPTFVKDRRAMKREYEEFKVRINVLVAESQKKPEEGWVLQDGTPWPGNNTDNHPGMIQVCLGSAGAVDNEGKSLPRLVYVSREKCSGYQHHNKAGAMNSLLRVSAVLSNAPFVLNLDCDQYINNSKAIREAMCFLMDPLLGKKTAYVQFPRRFDGIDDNDRYANHNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYKPPTEKRQNTGFSCCCCCSDNCRSEFDVEEIDGFHEDNKEQEESSFMSLKFFEKKFGESPVFIASALMEDGGLPKGTNTRILVKEAIHVISIGYEEKTEWGKEIGWLYGSITEDILTGFNMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLKWASGSTEIFFSGYCPLWYGYSGKLKWLQRLAYTNHIVYPFSSIPLLVYCIIPAICLLTGKFILPTLTSLASIWLMTLFISIILTCVLELRWSKVNIQDWWCNEQFWVIGGVSAHLFAVFQGLLKVAGLNTNFTVRTKSTDSAAFGQLHLFKWTTLLIPPTSIVILNMVGIVAGVSEAINSGYNSWGLLFGKVFFSFWVIVHLYPFLKGLMGRQNKTPIIVVLWATLLALIFSMIWVRIDVFLPKKTGPVLSQCGIEC 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01256 892 Pfam Cellulose synthase 190 884 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vifa3g01256 892 Coils Coil 288 308 - -
Vifa3g01256 892 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 695 IPR029044 -
Vifa3g01256 892 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 93 856 - -
Vifa3g01256 892 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 299 483 IPR029044 -
Vifa3g01256 892 FunFam Cellulose synthase 307 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01256 Vifa-Chr3 324955983 324959732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01256 81 892 Cell Wall Biosynthesis AT5G17420 68.498 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01256 K10999 - gmx:100777278 1456.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01256 3 324955983 324959732 Vifa3g01256 3 324955983 324959732 ECH