Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01253 ATGTCGAAGAGAGGTCGCGGTGGTTCCGCTGGAAACAAGTTCCGCATGTCGCTGGGTCTTCCAGTGGCTGCGACGGTTAATTGTGCTGACAACACCGGAGCGAAGAATCTGTACATCATTTCGAAGGGAAAGCCAGATCTGAGGAAAAAGGTTTTGCCTGCCGTCATCGTTCGTCAACGTAAGCCATGGCGCCGAAAGGACGGTGTCTTCATGTACTTTGAAGATAACGCTGGTGTCATTGTGAATCCTAAGGGAGAAATGAAAGGTTCTGCTATTACTGGTCCTATTGGTAAAGAGTGTGCTGATCTATGGCCTAGAATCGCAAGTGCTGCCAATGCCATTGTTTGA 348 0.4885 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01253 115 Gene3D Ribosomal protein L14 41 115 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa3g01253 115 Gene3D Ribosomal protein L14 1 40 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa3g01253 115 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 40 114 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa3g01253 115 SUPERFAMILY Ribosomal protein L14 11 115 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa3g01253 115 Pfam Ribosomal protein L14p/L23e 46 115 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa3g01253 115 ProSitePatterns Ribosomal protein L14 signature. 54 80 IPR019972 -
Vifa3g01253 115 SMART Ribosomal_L14_2 19 115 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa3g01253 115 Hamap 50S ribosomal protein L14 [rplN]. 19 115 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01253 Vifa-Chr3 324305188 324306290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01253 1 115 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 80.714 2.34e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01253 K02894 - qsu:111992202 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01253 3 324305188 324306290 Vifa3g01253 3 324305188 324306290 ECH