Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01251 ATGGCGCCCAATCCGAAAGTTGTAGCGGCCTATCGTGCAATGGCAAGTCTTGGGATTTCTGAATCGCAAGTGAAACCTGTGTTAAAGAAACTTCTCAAATTATATGATAAAAATTGGGAACTTATCGAGGAAGGGAGCTACAGAGCTCTTGCAGATGCTATATTTGAAGCCGATGCTTCCGAGGAGCCAGAACATCCAAAGAAAAACAAGAGAGTTCATGAAGAAGAGGCGGAGGCTGAAGAAGCTCTTATAAATGTTGAACCTGTTCAACCTTTGAAAAGGTTGAGATTAAGAGGACAAGAGAACAATTCTACTAGTTCAGCTCCTTCCCCTTCAAAGAAGCCTCACATTGAAAAGGCCACAGCACCTGAGGGCAGCTCTGCACAGCAGCATCAAAACAAAGCAGTGTCATCAGATGGAAACACGAGGATTGCAGCGCGTCCAGCTCCCATGCAAGATGCTAGTTCTGACAGAGGAAAGCAACCTGCATTGCCTCAAGATTCTCTTAGAGGGAGAAAACCTGTATGTGAAAGGGCATCTCCATCTAAACAAACAACAGTTCAACCTGGAAGGCTTGTGTTACCAAACAACCAAATGCCTCATGCCAATGCATTGATCATACCTAAAGATGAGCCTGTTGATGAATCACCTGATTATGAGCTTCCCATTGCAATGGTTCCTCCTGAACCGTCAAGTTTAAGGCATTCAATGAAGAGTGGTATTACTAGAAAGCAAGGTGGCCATGTACCTGTGACATCATCACAGCACAAAAATGGAGTTAAAGATAAAGAAGTGGCTTCTGATGTTGTGATAGCCTCTTCAGCTCAGGGAGAGGTAAAACTTTCTCTGAGCTACAGTTCAGCTCTTCAAGGACCAGATTTTCGCATGCCTACTCAGGAACAGCTTCTCAAAATGATGGAGGATAGATGTCTACGATCATATAAAATCACTGACCCAAATTTTTCTGTCGCGAAAATGTTGAGGGATATGTGTGATTGCATGTTGAAATTCAGTACTGATTCAAATGATAACTCACAAGAAAGTTCTATGACAAGACCAACCATTGATGTATTGAAGGAACCGGAGGCTAATGGCACTCCGGGTGTTGGGGGAAGTAAGGATTTGGACACAGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCCCCTCGTGGTCCCTATTCGCCAGCCCATCAGAGCGGCTTGGATGATGCTGCAGTGATTTCCAAGATGGACATCTCAAATGATATTCCACAAAGTGATGCTGTAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCACACAGTTTAGTAGTTGTTCCACATCATCAGCTTACAGTAGATGATATAAGGTCTTTTCATAATGTTAATGACATTACAAAAGGAGAAGAGATTAATCAAATTCCATGGGTGAATAAAACTACTAATGATTTCCCTCCACCCTTCAATTACATACCCCAAAACCTTGTATTCCAAGACGCTTATGTTAACATTTCTCTATCACGTATTGCGGCTGAGGACAGTTGTCCCTGCATAGGAAGTTGTGTCTTGTTGTCAACACATTGTGCCTGTACAGATAAAACTGGGGGCGAGTTTGCATATACTGCTCAAGGCCTACTGAAGGATGAATTTTTGGAAGAGTGTGTTGCTATTAGTCACAACCCTCGACAACATTGCTTTTATTGCAAAGATTGCCCACTTGAAAGGTCCAAGAGTAATGGTTATTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGCTGGAGAAAATGCGGCTGTGGGAAACAATGTGGCAATCGCCTTATCCAGCGAGGAATAACATGCAACTTGCAGGTATTTTTCACTTCCGAAGGAAAAGGATGGGGTCTTCGTACTTTAGAGGACCTGCCAAAAGGAGCATTTGTATGCGAGTTTGTTGGAGAGATTTTAACTGTTAAAGAGTTGCATGAGAGGAACATAAAATGTGCTGAAAATGGGAAATCTACTTACCCAATTCTACTGGATTCTGATTGGGATTCAGAATTTGTGAAGGATGAAGAAGCTCTATGCTTAGAAGCAGCGTCCTTTGGCAACATTGCTAGGTTTATTAATCACAGATGTTCTGATGCAAACTTGGTTGAAATACCAATTCAAATCGAGTGTCCAGATCGTTATTACTATCATTTTGCCCTTTTCTCTTCCAGAAAAATAGCAGCACAAGAAGAGCTCACTTGGGATTATGGCATTGACTTTGACGACAGTGATCAACCTATCAAACTGTTTGAGTGCAAATGCAGCAGTAAGTTCTGCAGGAATATGAAGCGATCAAACGGATCCACTAGATCTGCCTCAATTTCTGGATGA 2376 0.4209 MAPNPKVVAAYRAMASLGISESQVKPVLKKLLKLYDKNWELIEEGSYRALADAIFEADASEEPEHPKKNKRVHEEEAEAEEALINVEPVQPLKRLRLRGQENNSTSSAPSPSKKPHIEKATAPEGSSAQQHQNKAVSSDGNTRIAARPAPMQDASSDRGKQPALPQDSLRGRKPVCERASPSKQTTVQPGRLVLPNNQMPHANALIIPKDEPVDESPDYELPIAMVPPEPSSLRHSMKSGITRKQGGHVPVTSSQHKNGVKDKEVASDVVIASSAQGEVKLSLSYSSALQGPDFRMPTQEQLLKMMEDRCLRSYKITDPNFSVAKMLRDMCDCMLKFSTDSNDNSQESSMTRPTIDVLKEPEANGTPGVGGSKDLDTGSHSSNGSIQVNSFSALVSPRGPYSPAHQSGLDDAAVISKMDISNDIPQSDAVMQPEDPVSPNSHSLVVVPHHQLTVDDIRSFHNVNDITKGEEINQIPWVNKTTNDFPPPFNYIPQNLVFQDAYVNISLSRIAAEDSCPCIGSCVLLSTHCACTDKTGGEFAYTAQGLLKDEFLEECVAISHNPRQHCFYCKDCPLERSKSNGYLEPCKGHLKRKFIKECWRKCGCGKQCGNRLIQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERNIKCAENGKSTYPILLDSDWDSEFVKDEEALCLEAASFGNIARFINHRCSDANLVEIPIQIECPDRYYYHFALFSSRKIAAQEELTWDYGIDFDDSDQPIKLFECKCSSKFCRNMKRSNGSTRSASISG 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01251 791 Pfam Ubiquitin-binding WIYLD domain 6 58 IPR018848 -
Vifa3g01251 791 MobiDBLite consensus disorder prediction 123 140 - -
Vifa3g01251 791 CDD SET_SETDB-like 487 752 - -
Vifa3g01251 791 Pfam SET domain 631 752 IPR001214 GO:0005515
Vifa3g01251 791 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 791 IPR025776 -
Vifa3g01251 791 ProSiteProfiles Pre-SET domain profile. 514 616 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g01251 791 Pfam Pre-SET motif 466 611 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g01251 791 SMART set_7 619 758 IPR001214 GO:0005515
Vifa3g01251 791 MobiDBLite consensus disorder prediction 58 79 - -
Vifa3g01251 791 MobiDBLite consensus disorder prediction 340 383 - -
Vifa3g01251 791 ProSiteProfiles SET domain profile. 619 752 IPR001214 GO:0005515
Vifa3g01251 791 MobiDBLite consensus disorder prediction 97 112 - -
Vifa3g01251 791 Gene3D SET domain 465 777 IPR046341 -
Vifa3g01251 791 MobiDBLite consensus disorder prediction 242 262 - -
Vifa3g01251 791 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 785 - -
Vifa3g01251 791 SUPERFAMILY SET domain 475 775 IPR046341 -
Vifa3g01251 791 MobiDBLite consensus disorder prediction 58 196 - -
Vifa3g01251 791 Gene3D - 1 59 IPR043017 -
Vifa3g01251 791 SMART preset_2 463 603 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g01251 791 MobiDBLite consensus disorder prediction 179 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01251 Vifa-Chr3 324267804 324273935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01251 595 777 C2H2 Transcription Factor Family AT2G23740 38.378 2.10e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g01251 Pre-SET 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01251 - - gmx:100778335 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01251 3 324267804 324273935 Vifa3g01251 3 324267804 324273935 ECH