Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01249 ATGTCTACGGGTTCTAAAGATGATAACTTGGCTCTTTCTTCTGAGGATTCTTCTAGCCCGGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGTCTTTCTCATCCTGCAAAGTATCATCATCATCATCATCATGGTAACTATGCTAGGATTTTTACTGCTAAGGATTTTTCTTCTTCTTCACCTTCCTCTGCTGGAACTAAGAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGTCAAGTAGTTGGATGGCCGCCCCTTCGAACATATCGAGTGAATAGCTTTAATGCCAATGTGAAATCAACTGAAGCATTCAACTCTGTGGCTGAGAAGAACAAGAACAATAATACCGTGGCAAGGAAGAGTACTGACAACGGAAAGGATGAAAATAACGTTAATGTCAAAGATAAAAGAAACCTCAGGAGTTCCCCGTTTGTCAAAGTAAATATGGATGGGATACCGATTGGAAGGAAGGTTGATTTGAGCGCTCACAGTTCCTACGAAACATTGGCAGAGATATTGGAGGACATGTTTGACGAATCATCGACAGGCGTCACTTGCAAAGGATCAAACGGGGAGGATCACAACATGACTATCAGAGGAGAAAAGCTTTCAATACTGTTGGATGGATCTTCTAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGAATGTTCCTTAGTTCCGTGAAGAGGCTAAGAATCATGAGGACATCCGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAGCAGCAGACCGAAAAGCAAGCCGAAATAG 819 0.431 MSTGSKDDNLALSSEDSSSPDESELELGLGLSLSHPAKYHHHHHHGNYARIFTAKDFSSSSPSSAGTKRPADSLDATNRPSQVVGWPPLRTYRVNSFNANVKSTEAFNSVAEKNKNNNTVARKSTDNGKDENNVNVKDKRNLRSSPFVKVNMDGIPIGRKVDLSAHSSYETLAEILEDMFDESSTGVTCKGSNGEDHNMTIRGEKLSILLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVKRLRIMRTSEANGLAPRLEEKSSRPKSKPK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01249 272 ProSiteProfiles PB1 domain profile. 145 252 IPR000270 GO:0005515
Vifa3g01249 272 MobiDBLite consensus disorder prediction 1 27 - -
Vifa3g01249 272 MobiDBLite consensus disorder prediction 57 82 - -
Vifa3g01249 272 MobiDBLite consensus disorder prediction 115 134 - -
Vifa3g01249 272 MobiDBLite consensus disorder prediction 57 80 - -
Vifa3g01249 272 MobiDBLite consensus disorder prediction 1 18 - -
Vifa3g01249 272 Pfam AUX/IAA family 50 259 IPR033389 -
Vifa3g01249 272 SUPERFAMILY CAD & PB1 domains 141 248 - -
Vifa3g01249 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 255 IPR003311 GO:0005634|GO:0006355
Vifa3g01249 272 FunFam Auxin-responsive protein 140 260 - -
Vifa3g01249 272 Gene3D - 140 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01249 Vifa-Chr3 322924395 322926288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01249 140 259 B3 DNA Binding Superfamily AT1G59750 34.167 6.34e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vifa3g01249 AUX_IAA 3.8e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01249 K14484 - gmx:100527033 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01249 3 322924395 322926288 Vifa3g01249 3 322924395 322926288 ECH