Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01248 ATGCAGATGAAAAATCAGTTTTTCTTCTTCTTATTCATCTGTTGCTTTTCTGCTGCAGAAAACAATGAACAATCTGCATTACTTTCTGTAAAAGCAGGTCTCATTGATCCATTGAATAGTTTACATGATTGGAAGGATGCAGGTGCAGCACAAGCTCATTGTAACTGGACAGGTGTCGAATGTAACTCGGCCGGAGCTGTAGAGAAGCTTAATCTCTCACACATGAATCTTAGTGGAAGTGTTTCCAATGAGATACAAAGTTTGAAAAGTTTAACTTTTTTAAACTTGTGCTGCAATGGATTTGAGTCATCACTGTCAAAGCACATAACCAGTCTTACCTCACTCAAGAGTCTCGACGTGAGCCAGAATTTCTTCACCGGGGACTTTCCATTAGGCCTTGGAAAGGCATTGGGACTCGTTACGTTGAATGCATCGAGCAACAATTTCTCTGGTTTTCTTCCTGAGGACCTCGGAAATGTCTCTTCCTTGGAGACACTTGATCTTAGAGGAAGCTTCTTTGAAGGTTCTATACCTAAGTCTATCTGTAACTTGAGTAAGTTGAAGTTCCTTGGTCTATCAGGAAATAATCTCACCGGGAAAATCCCAGTTGAGATTGGAAAATTTTCGTCGCTGGAGTCTATGATCATTGGTTATAACGAATTTGAAGGCGCTATTCCAAAAGAGTTTGGAAATTTAACCAAGCTGAAGTATCTTGATTTAGCAGAAGGTAATTTTAGTGGTGAAATTCCTGCTGAGTTGGGAAAGCTCAAGTTATTGAACACAGTTTTCTTATATAAGAACAGTTTTGAAGGAAAAATCCCACCAACTATTGGCAACATGACTTCATTGGTGCTGTTGGATCTCTCAGATAACATGTTATCAGGAAACATTCCGGCCGAGATTAGTCAGCTGAACAACTTGCAGCTTCTGAATGTCATGAGGAACAAGCTATCTGGTCCTGTACCTTCTGGTCTTGGAGATTTGCCTCAACTAGAGGTGCTTGAGCTATGGAACAATTCGTTCTCGGGGCCATTGCCTAGTGAGCTCGGCAAGAATTCGCCATTGCAGTGGTTGGACGTTTCGTCCAATTCACTCTCTGGCGAAATTCCAGAAACCCTTTGCACTAAGGGAAATCTCACCAAGCTTATACTTTTCAACAATGCATTCAAGGGTCCAATTCCAATAAGCCTATCAAAATGTCCCTCGCTCGTTCGTGTTCGGATTCAAAACAACTTTCTTTCTGGTACAATCCCTGTTGGTTTTGGTAAGCTTGGGAAGCTTCAGAGACTAGAATTGGCTAACAATAGTCTCACCGGTGGAATTCCGAACGACGTTGCTTCTTCCACGTCTCTCTCTTTCATTGATTTCTCCAGAAACAATCTCAGCTCTTCCATTCCTTCGACTGTTATTTCCATTCCAAATCTGCAAACGTTCATGGTCTCCGAAAACAACCTGGAAGGTGAAATTCCAGACCAATTCCAGGACTGTCCCTCACTCGGAGTCCTTGATCTCTCATCGAACTTCTTTTCTGGAACCATTCCAGAAAGCATTGCTTCATGTCAGAAATTGGTGAAATTGAGCCTACAGAACAACCGATTGACCGGTGGCATCCCAGAAGCAATAGCAAGCATGCCTACATTGTCTATTCTTGATCTTGCTAACAACACTCTAACTGGTCAAATACCTGGTAGCTTTGGCATATCTCCGGCTCTCGAAACATTCAATGTCTCATACAACAAGCTAGAAGGTCCTGTCCCAGAAAATGGCATGCTAAAAGCAATCAATCCAAATGATCTTGTGGGAAATGCTGGCCTATGTGGTGGCTTCTTCCCTCCATGTGGAAAAACCTCGGCAAACTCATTAAGGCACGGAAGCTCGCATGCAAAGCACGTTATTGTAGGATGGATAGTTGGAATATCATCAATCTTAGCCATTGGAGTTGCAGCTTTGGCAGCAAGATTTATATACACGAAGTGGTACACCGAAGGATTGTGCTTCCAAGGAAGATTTTATAGAGGTGGCAAAGGGTGGCCTTGGAGACTGATGGCATTTCAGAGACTTGATTTTACGAGTACCGATATACTATCCTGCATCAAAGAAACAAACGTGATAGGCATGGGAGGAACCGGCGTTGTTTATAAGGCCGAGATACCACACTCAAGTACAGCTGTGGCTGTTAAAAAACTGTGGAGAACAGAACCCGATATTGAGGTAGGAAGTAGTAGTGACGATCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGGCATAGGAATATTGTTAGACTACTAGGTTTTCTTTACAATGACACTGATTTGATGATAGTTTATGAATTTATGGTGAATGGAAACCTTGGAGATGCCTTGCATGGTAAACAAGCTGCGAGATTGCTTGTTGACTGGGTTTCCCGGTATAACATAGCTCTAGGAATCGCACAAGGACTCGCTTATCTTCATCACGACTGCCATCCACCTGTTATCCATCGAGACATCAAGTCAAACAACATACTGCTCGATGCAAATCTTGAGGCAAGGATAGCAGATTTCGGATTGGCCAAAATGATGATTCGGAAGAATGAAACAGTCTCCATGATTGCTGGATCCTATGGATACATTGCTCCTGAATATGGATACTCCTTGAAGGTAGACGAAAAGATTGACATTTACAGCTTTGGAATAGTTCTGTTGGAGCTGATAACAGGAAAGCGGCCGATAGATCCGGAGTTTGGAGAATCTATCGACATTGTTGGGTGGATTAGAACGAAGATAGACAAAAATTCTCCAGAAGAAGCATTAGACCCAAGTGTAGGAAACTGTAAACATGTTCAAGAAGAGATGCTTTTAGTTCTCAGAATAGCACTTCTCTGCACTGCTAAGCTACCTAAGGACAGACCCTCCATGAGGGATGCTATAATGATGCTAGGAGAAGCAAAGCCAAGGAGAAAAAGTGGTAAGAACAATGATACATTAACTGCTAACAAAGAGATGTCAATAATTAGAACATCACCAGTTAATGACCTTCTGTAA 3027 0.4219 MQMKNQFFFFLFICCFSAAENNEQSALLSVKAGLIDPLNSLHDWKDAGAAQAHCNWTGVECNSAGAVEKLNLSHMNLSGSVSNEIQSLKSLTFLNLCCNGFESSLSKHITSLTSLKSLDVSQNFFTGDFPLGLGKALGLVTLNASSNNFSGFLPEDLGNVSSLETLDLRGSFFEGSIPKSICNLSKLKFLGLSGNNLTGKIPVEIGKFSSLESMIIGYNEFEGAIPKEFGNLTKLKYLDLAEGNFSGEIPAELGKLKLLNTVFLYKNSFEGKIPPTIGNMTSLVLLDLSDNMLSGNIPAEISQLNNLQLLNVMRNKLSGPVPSGLGDLPQLEVLELWNNSFSGPLPSELGKNSPLQWLDVSSNSLSGEIPETLCTKGNLTKLILFNNAFKGPIPISLSKCPSLVRVRIQNNFLSGTIPVGFGKLGKLQRLELANNSLTGGIPNDVASSTSLSFIDFSRNNLSSSIPSTVISIPNLQTFMVSENNLEGEIPDQFQDCPSLGVLDLSSNFFSGTIPESIASCQKLVKLSLQNNRLTGGIPEAIASMPTLSILDLANNTLTGQIPGSFGISPALETFNVSYNKLEGPVPENGMLKAINPNDLVGNAGLCGGFFPPCGKTSANSLRHGSSHAKHVIVGWIVGISSILAIGVAALAARFIYTKWYTEGLCFQGRFYRGGKGWPWRLMAFQRLDFTSTDILSCIKETNVIGMGGTGVVYKAEIPHSSTAVAVKKLWRTEPDIEVGSSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDTDLMIVYEFMVNGNLGDALHGKQAARLLVDWVSRYNIALGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSFGIVLLELITGKRPIDPEFGESIDIVGWIRTKIDKNSPEEALDPSVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDAIMMLGEAKPRRKSGKNNDTLTANKEMSIIRTSPVNDLL 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01248 1008 Gene3D Transferase(Phosphotransferase) domain 1 780 1000 - -
Vifa3g01248 1008 Pfam Protein kinase domain 700 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01248 1008 SMART serkin_6 698 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01248 1008 ProSiteProfiles Protein kinase domain profile. 698 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01248 1008 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 20 171 - -
Vifa3g01248 1008 SMART LRR_typ_2 328 352 IPR003591 -
Vifa3g01248 1008 SMART LRR_typ_2 472 495 IPR003591 -
Vifa3g01248 1008 SMART LRR_typ_2 112 136 IPR003591 -
Vifa3g01248 1008 SMART LRR_typ_2 184 208 IPR003591 -
Vifa3g01248 1008 SMART LRR_typ_2 424 448 IPR003591 -
Vifa3g01248 1008 SMART LRR_typ_2 280 304 IPR003591 -
Vifa3g01248 1008 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515
Vifa3g01248 1008 Pfam Leucine rich repeat N-terminal domain 21 62 IPR013210 -
Vifa3g01248 1008 FunFam Leucine-rich repeat receptor protein kinase EMS1 273 356 - -
Vifa3g01248 1008 PANTHER UNNAMED PRODUCT 169 906 - -
Vifa3g01248 1008 ProSitePatterns Protein kinases ATP-binding region signature. 704 728 IPR017441 GO:0005524
Vifa3g01248 1008 Gene3D Phosphorylase Kinase; domain 1 689 779 - -
Vifa3g01248 1008 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 172 272 - -
Vifa3g01248 1008 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
Vifa3g01248 1008 SUPERFAMILY RNI-like 265 583 - -
Vifa3g01248 1008 Gene3D Ribonuclease Inhibitor 136 224 IPR032675 -
Vifa3g01248 1008 SUPERFAMILY L domain-like 51 317 - -
Vifa3g01248 1008 Gene3D Ribonuclease Inhibitor 324 621 IPR032675 -
Vifa3g01248 1008 Gene3D Ribonuclease Inhibitor 225 323 IPR032675 -
Vifa3g01248 1008 Gene3D Ribonuclease Inhibitor 21 135 IPR032675 -
Vifa3g01248 1008 SUPERFAMILY Protein kinase-like (PK-like) 691 974 IPR011009 -
Vifa3g01248 1008 FunFam MDIS1-interacting receptor like kinase 1 698 783 - -
Vifa3g01248 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Vifa3g01248 1008 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 357 617 - -
Vifa3g01248 1008 FunFam MDIS1-interacting receptor like kinase 1 784 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01248 Vifa-Chr3 322920716 322923865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01248 1 1008 Receptor kinase-like Gene Family AT1G08590 59.904 0.0 1181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g01248 Pkinase 7.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01248 - - gmx:100788430 1676.37