Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01244 ATGCCTATACCTCAATTTCTCCATCAAATCTCTTCTTTAATAGTAACCTCTTTTTCACAATCATCGCTTCTCCGATTATCCGTATTAGAACTTGCTGCAATATGTGTGAATCTCACTCTTGTTCTCTTGTTCCTCTTTGTTGTCTCGGTTAACAAGATTCTCGTCAATAAGCGAAATCGAATAGGTAAACACAACACTACGGGAACCGATAGTCTTGTTATTGATACAGAAACAACGAGTCATGTTTCTAATATAACTGTTTGGTTCAAGTTAACTGTGTTGTCTTGTTTCTATGTTTTGGTTGTGCAAGTTTTAGTGTTGGGATTTCACTTGTGTGTTTTTATATGGGGTGAGACTCTACGCTGGTCGCTTCTTTTTGTGTCGGCTTCACAGGTTTTGGCTTGGTCTGTTTTGAGCTTCTCGGCTTTGAATAGCAAGTTTAAGGGGTTAGAGAAGTTTCCATTTTTGTTAAGAGTTTGGTGGCTTTTATCATTTGTTATTTGCTTGTGTGGTTTATATCTTGATGGAAGAGGGTTTTCGGTGGAGGGTTCTAAGTATTTTTCTTCTCGTGCTGTTGCAAATTTTGCTGTTACACCAGGACTTGCTTTTTTAGGTGTGGTTGCTGTTAGGGGTGTTACTGGTATACAAGTTTGTAAAAACTCTGATCTTCAAGAGCCATTGCTTGTTGTTCAAGAAGAAGAAGAACTAGGGTGTCTTAAAGTTACTCCGTATTGGGATGCGGGACTTTTTAGCTTAGCCACACTTTTTTGGCTGAATCCACTTCTTTCCCTTGGTGCAAAGAGACCACTTGAGCTTAAGGATATTCCACTTGTTGCACCGAGTGAAAGAGCTAAGACGAGTTACAAGGTTGTGAATTCTAATTGGGAGAAATTGAAGGCTGAAAATCAAAATCAGAATCTATCTAAGCAACCTTCATTAGCTTCGGCACTTCTCAAGTCATTTTGGAAGGAAGCAGCTTTGAATGCTGTATTTGCTGGCATGACTACTTTGGTTTCGTATGTAGGTCCATACATGATAAGTTACTTTGTTGATTTCTTGGGTGGTATAGAGACTTTTGCTCACGAGGGTTATATCCTTGCTGGTATATTCTTTATGGCGAAGCTTGTAGAGACGCTGACAACTAGGCAGTGGTATCTAGGAGTGGACATATTAGGTATGCATGTTAGGTCAGCGCTAACTGCAATGGTGTATAGGAAGGGACTCAGACTCTCGAGCTCGGCGAAGCAAAGTCATACAAGTGGGGAGATTGTTAACTACATGGCGGTTGATGTTCAGAGGGTAGGGGATTTTGCTTGGTACCTTCATGACATGTGGATGCTACCTCTGCAAATTGCTCTTGCTCTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCAACATTGATTGCTACAATCATTTCCATTGTTGTCACTATTCCTGTGGCTAGGATACAAGAAGATTATCAAGACAAGTTGATGTCTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGTCTGAGAAATATGAGGATTCTTAAGCTGCAAGCTTGGGAGGATCGATATAGAATAAGATTGGAGGAAATGCGTGGAGTAGAGTACAACTGGCTAAGGAAAGCACTTTATTCTCAGGCTTTCATAACTTTCATTTTTTGGAGCTCCCCTATATTTGTTTCGGCAGTCACATTTGCTACTACCATATTTTTAGGAACTCAGTTGACTGCAGGTGGTGTTCTATCTGCTTTAGCTACTTTCAGGATTCTCCAAGAACCTCTCAGAAATTTTCCTGATTTGGTATCAACCATGGCTCAGACAAAGGTTTCTCTTGATCGCATATCCAATTTCCTGCAGGATGAAGAATTGCGGGAAGATGCAACTATTGTCTTGCCGCCCGGGACTTCTAACATTGCCATAGAAATTATGGATGGTGTCTTCTGCTGGGACACTTCTTCCTCTAGGCCTACACTATCGGGAATACATGTGAAAGTCGAGAGGGGAATGAGTGTAGCTGTTTGTGGCACTGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATACTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGACTGTGTGGTTCTGCCGCATATGTTTCACAATCAGCATGGATACAGTCAGGAAATGTAGAAGAAAATATTTTGTTTGGAAACCCAATGGATAAAGCAAAGTACAAGAATGTTATTCACGCTTGTTCACTAAAAAAGGACCTAGAGCTTTTCTCACATGGAGACCAAACAATTATTGGTGAAAGAGGTATAAATATGAGCGGTGGCCAGAAGCAACGGATTCAGCTTGCACGAGCACTTTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTTAGTGCACTTGATGCCCACACTGGATCAGAACTATTCAGAGAGTATGTATTGACAGAACTAGTAGATAAAACTGTCATTTTTGTGACCCACCAAGTTGAATTTCTTCCAGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCAGATCATACAGGCAGGAAAGTATGATGATCTTCTACAGGCAGGAACAGATTTTAGAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTAATCACTCTTCCTCAGAAGATTCAGATGAAGATGAGTCCTTGGATACATCTATTATGACCATGAAGAAATCTATTTCTTCTGTTAATGACATTAACAGTTTGGCGAAGGAAGTTACCGAGGGATCTTCAGATTCTAAAGAAATTAAGGAAAAGAAGAAGGCAAAACGCTCGAGAAAAAAACAGCTTGTCCAGGAAGAGGAGAGGGTTAGAGGTAGAATCAACATGAAAATGTACCTGTCTTACATGTCTGCCGCATATAAAGGCTTATTGATTCCCCTCATCGTCATTGCACAAACACTGTTCCAGTTCCTTCAGATTGCCAGCAATTGGTGGATGGCTTGGGCAAATCCTCAGACAGAAGGAGACGAGCCCAAAGTAACTCCCATGAATCTTCTTCTTGTTTACATGGCTCTTGCCTTTGGAAGCTCGTGCTTCATATTCGTAAGGGCCGTTCTTGTTGCTACATTCGGTCTAGCAGCAGCGCAGAAGCTATTTTTTAACATGCTTAGAAGTATCTTCCATGCTCCAATGTCTTTCTTTGATTCTACACCAGCTGGAAGGATCCTGAACCGTGTTTCAATTGATCAAAGTGTTGTGGACCTTGACATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACAATACAGCTTATTGGTATTGTTGCTGTGATGTCACAGGTTACATGGCAAGTTTTGCTCCTAGTTGTCCCAATGGCAATTGGTTGTTTATCGATGCAGAAATACTACATTGCTTCCTCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCGATTGCTGGAGCAGCCACAATCAGAGGTTTTGGACAAGAAAAAAGGTTCTTGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCGCGACCATTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTTTGCCTGCGCATGGAATTACTTTCAACTTGTGTATTTGCTTTCTGCATGTTCTCACTTGTGACCTTTCCCCGTGGAAGTATTGACCCCAGCATGGCTGGACTTGCTGTGACGTATGGCCTGAATTTAAATGGACGCTTGTCTCGTTGGATACTTAGCTTTTGTAAACTTGAAAACAAAATAATATCTATTGAAAGAATCTATCAGTACAGTCAAATTCCTAATGAAGCACCACAAGTTATTGAAGAATCTCGCCCTCCATCCTCATGGCCCGAGAATGGGACAATCCAACTATTTGATCTGAAGGTTCGTTACAAAGAAAATCTTCCCTTGGTGCTTCATGGAGTATCCTGCATATTTCCTGGAGGAAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGCAAATCTACTCTGATTCAAGCATTATTTCGATTGGTTGAACCAGCAAACGGGAGTATCCTTATAGACAACATTGATATCTCAGGAATTGGCCTTCATGATCTTAGGACCCATTTGAGTATCATACCACAAGATCCGACCTTATTTGAGGGCACCATTCGTGGCAATCTGGATCCTCTTGAAGAGCATTCTGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGATATCATCCGTGCAAAAGGAGAAAAGCTCGATACACCAGTGCTAGAAAATGGTGATAATTGGAGTGTAGGACAACGGCAACTTGTTTCTCTTGGCCGAGCTCTGCTGAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCTGTTGATACTGCTACTGATAATCTTATCCAGAAGGTTATCCGAGAAGAGTTCAAAGACTGCACTGTTTGCACTATTGCACATCGTATTCCCACTGTTATTGACAGTGATCTTGTCCTGGTACTCAGCGATGGTCTAGTTGCAGAGTTTGACACTCCAGCGCGGCTATTAGAAGACAAGTCATCCATGTTTTTGAAGTTGGTGACTGAATATTCATCGCGATCAAATGGCACGGATCTTTAA 4590 0.4124 MPIPQFLHQISSLIVTSFSQSSLLRLSVLELAAICVNLTLVLLFLFVVSVNKILVNKRNRIGKHNTTGTDSLVIDTETTSHVSNITVWFKLTVLSCFYVLVVQVLVLGFHLCVFIWGETLRWSLLFVSASQVLAWSVLSFSALNSKFKGLEKFPFLLRVWWLLSFVICLCGLYLDGRGFSVEGSKYFSSRAVANFAVTPGLAFLGVVAVRGVTGIQVCKNSDLQEPLLVVQEEEELGCLKVTPYWDAGLFSLATLFWLNPLLSLGAKRPLELKDIPLVAPSERAKTSYKVVNSNWEKLKAENQNQNLSKQPSLASALLKSFWKEAALNAVFAGMTTLVSYVGPYMISYFVDFLGGIETFAHEGYILAGIFFMAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFAWYLHDMWMLPLQIALALVILYKNVGIAFVATLIATIISIVVTIPVARIQEDYQDKLMSAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEYNWLRKALYSQAFITFIFWSSPIFVSAVTFATTIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISNFLQDEELREDATIVLPPGTSNIAIEIMDGVFCWDTSSSRPTLSGIHVKVERGMSVAVCGTVGSGKSSFLSCILGEIPKLSGEVRLCGSAAYVSQSAWIQSGNVEENILFGNPMDKAKYKNVIHACSLKKDLELFSHGDQTIIGERGINMSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLTELVDKTVIFVTHQVEFLPAADMILVLKEGQIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPNHSSSEDSDEDESLDTSIMTMKKSISSVNDINSLAKEVTEGSSDSKEIKEKKKAKRSRKKQLVQEEERVRGRINMKMYLSYMSAAYKGLLIPLIVIAQTLFQFLQIASNWWMAWANPQTEGDEPKVTPMNLLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMSQVTWQVLLLVVPMAIGCLSMQKYYIASSRELVRIVSIQKSPIIQLFGESIAGAATIRGFGQEKRFLKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTCVFAFCMFSLVTFPRGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPNEAPQVIEESRPPSSWPENGTIQLFDLKVRYKENLPLVLHGVSCIFPGGKKIGIVGRTGSGKSTLIQALFRLVEPANGSILIDNIDISGIGLHDLRTHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGDIIRAKGEKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKVIREEFKDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPARLLEDKSSMFLKLVTEYSSRSNGTDL 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01244 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 967 1237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g01244 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 862 IPR027417 -
Vifa3g01244 1529 Coils Coil 919 942 - -
Vifa3g01244 1529 FunFam ABC transporter C family member 5 928 1265 - -
Vifa3g01244 1529 CDD ABC_6TM_ABCC_D2 965 1259 IPR044726 GO:0140359
Vifa3g01244 1529 Gene3D - 635 868 IPR027417 -
Vifa3g01244 1529 Pfam ABC transporter transmembrane region 968 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g01244 1529 Pfam ABC transporter transmembrane region 330 594 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g01244 1529 MobiDBLite consensus disorder prediction 910 935 - -
Vifa3g01244 1529 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524|GO:0016887
Vifa3g01244 1529 CDD ABCC_MRP_domain1 640 840 - -
Vifa3g01244 1529 FunFam ABC transporter C family member 3 1267 1519 - -
Vifa3g01244 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 326 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g01244 1529 CDD ABCC_MRP_domain2 1282 1502 - -
Vifa3g01244 1529 SUPERFAMILY ABC transporter transmembrane region 964 1264 IPR036640 GO:0005524|GO:0016020
Vifa3g01244 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1284 1518 IPR003439 GO:0005524
Vifa3g01244 1529 Pfam ABC transporter 1301 1449 IPR003439 GO:0005524
Vifa3g01244 1529 Gene3D ABC transporter type 1, transmembrane domain 292 622 IPR036640 GO:0005524|GO:0016020
Vifa3g01244 1529 Gene3D ABC transporter type 1, transmembrane domain 926 1265 IPR036640 GO:0005524|GO:0016020
Vifa3g01244 1529 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 246 1521 - -
Vifa3g01244 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 863 IPR003439 GO:0005524
Vifa3g01244 1529 SUPERFAMILY ABC transporter transmembrane region 317 625 IPR036640 GO:0005524|GO:0016020
Vifa3g01244 1529 FunFam ABC transporter C family member 10 309 622 - -
Vifa3g01244 1529 CDD ABC_6TM_ABCC_D1 327 614 IPR044746 GO:0140359
Vifa3g01244 1529 Pfam ABC transporter 658 792 IPR003439 GO:0005524
Vifa3g01244 1529 FunFam ABC transporter C family member 5 625 872 - -
Vifa3g01244 1529 Gene3D - 1267 1520 IPR027417 -
Vifa3g01244 1529 SMART AAA_5 1310 1495 IPR003593 GO:0016887
Vifa3g01244 1529 SMART AAA_5 667 848 IPR003593 GO:0016887
Vifa3g01244 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1275 1514 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01244 Vifa-Chr3 322070671 322077798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01244 654 856 Calmodulin-binding Proteins AT2G36910 31.532 1.01e-19 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01244 - - cam:101514243 2521.89