Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01242 ATGGCGCTATGGATGGAAAAGGGTTCGGAGCCCTTGACCGAAACAGAGAAAGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTTCAGCCTTTGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGGAAGAACCATTACTCTGAAGCTGTTGATTGCTACACAAGGGCAATTAATCAGAATGCCTTGACTGATTCTGACACCTCTATTCTTTTTTCAAATAGAGCGCTTGTTAATTTGTTACTTGGTAATTTCAGACGAGCACTTAATGATGCTAATGATGCACTCAAGTTGCAACCTTCAAACATAAAGGCCATTTATAGAGCTGCCAAAGCTTCTCTTTCGTTGAATTTGTTGGATGAAGCACAAGACTATTGTCAAATGGGTCTTCATTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGACAATCAGATTGGTGTTAAGATATTGGAGAATGAAAAGCATGAGGCTGAAGTTTCTAAGGCTGTTGCAGATGCAAAGGAACTTGTTTCTGCAATGGAAAATAGAGATTTGAAGATTGGAAAGGCCATGTATCGAGAACTTACTGGGTTGAAGAAACCTGTGTTAGACAAAACTAACATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTTTGCGAGACGGACATGTTTTCGGATCACCTTGATATGGTATTTGCAGAAGATCAGCCGCTTTCATGGGATGTTGAAAACAATTACAAGCGTGAATTTATTGAGTTATACTATGACGCTGGTTCTGGACCTCGTCTATCTAAGGAAAAACTCCTTTGTTATCTATTAGAGGGAACTGCAGCAGCTTCTAATGGGGTAGGTAGTGGTGATGAAGAGAAAGATGCGGTTGAGGATCTTAAGCAAAACACGGGCTCCCCTAAATGGATTAAAGTAAATGAAAGGAGAACACTCCATGATGTTCTGAAAGAGTCTAAGTTCATTATTCCTGAGATCCCAGTCTTCTATGTTGTTTCTAAGAAATCCAGCTTTTATAGCAAATTCAAAGATGGAAAGTGGGCTCCTCCAAGTGTATGA 1086 0.4033 MALWMEKGSEPLTETEKADLEAIAAIKESSAFELKEKGNQYVKMGKNHYSEAVDCYTRAINQNALTDSDTSILFSNRALVNLLLGNFRRALNDANDALKLQPSNIKAIYRAAKASLSLNLLDEAQDYCQMGLHLDPNNEELKKLDNQIGVKILENEKHEAEVSKAVADAKELVSAMENRDLKIGKAMYRELTGLKKPVLDKTNILHWPVLLLYAEVMSSDFIEDFCETDMFSDHLDMVFAEDQPLSWDVENNYKREFIELYYDAGSGPRLSKEKLLCYLLEGTAAASNGVGSGDEEKDAVEDLKQNTGSPKWIKVNERRTLHDVLKESKFIIPEIPVFYVVSKKSSFYSKFKDGKWAPPSV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01242 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 358 - -
Vifa3g01242 361 SMART tpr_5 71 104 IPR019734 GO:0005515
Vifa3g01242 361 SMART tpr_5 105 138 IPR019734 GO:0005515
Vifa3g01242 361 SMART tpr_5 31 66 IPR019734 GO:0005515
Vifa3g01242 361 Gene3D Tetratricopeptide repeat domain 26 150 IPR011990 GO:0005515
Vifa3g01242 361 SUPERFAMILY TPR-like 21 142 IPR011990 GO:0005515
Vifa3g01242 361 CDD CTWD_Cns1-like 170 353 - -
Vifa3g01242 361 Pfam Cns1/TTC4 Wheel domain 200 265 IPR044059 GO:0051879
Vifa3g01242 361 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01242 30 160 Calmodulin-binding Proteins AT3G25230 32.653 1.28e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01242 K24927 - gmx:100783179 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01242 3 321341315 321351529 Vifa3g01242 3 321341315 321351529 ECH