Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01235 ATGTCGTCAACTTCTCTTTGCATTCTCACTGTTTTTCTTCATTTGCTGCTTTACTCCTGCTCAGCGAATTTGGTTTCTATGAGTCCCTCGTTTGCTTCGTCCAAACCAGCTCAAGTGTGGATGGTTAAACCCTTTTCTGGGTCATCTTCTGATCATAGGATGTATTATGCTGTGGCTCCTTCCCCTTCCCAAACCCAAGCATGTGGCCTAAGCTGCCAGGAACCACTCACAGAAACTCCCTTTGGTTCACCTTGTGGTTGTGTGCTTCCCATGAGTGTCTTGCTTTTACTGGATGCAGCTCCTTTGGTTGTTTATCCGGTAATTAATGAGTTAGAGCTTGAACTTGCATCTGGCACATATTTGAAGCAAAGCCAGGTGAGGATAATGGGTGTTATTGCTGACACTCAAAATGAAGGAAAAAGCTTAGTTGAAGTTAACCTGGTACCACTTGGTGAGAAATTCGACAATATAACTGTGGTTCTGATATCCCGGAGACTTTGGCACAAGAAAGTTCCTCTAAGTAGGAGTCTTTTCGGTGATTACACAGTCTTGGAGACTACTTATCCAGGGATGCCATTATCTCCCCTGAATGGAACATCAACTGGGAGTGCTCCCCTTCCCAGCAGAAGTGTTGCAGGTTTCCCATTCAGCGTCGACTTTAACGGCATCAGCAAGAAGGATGAAATGAGTCTTAGCACCATAATCATCATTGCTGTATGTTCCATCTTACTCTTGCTGGCAATGGTTGGAGGAGCATTTTACACCATTTTAAAATGTAGGAAAGTCAGGAGACCATCAAGTGCGCCTGGCCTGCCATTCACACAGTCTCTAAACAAGAGATCTGCCATGGAGTCTTCATTGTCTAGCAGAATGACAAGCTCAATATCAATGTCCCATATGTCCCCCATAGCTACCTCTGTTCTTTCTGTGAAAAAGTTTTCCCTTTCTGAGCTTACGAAAGCAACAGATACGTTCAGTTCAGAAAAAATATTGGGGGAAGGAGGATTTGGGCGTGTTTATCATGGGAGATTAGATGATGGAACTGATGTTGCAGTTAAGGTACTAACAAAGGGTTTTCATCAAAATGGAAACCATGAATTTAATGTGGAAGTTGAGATGCTATGCCGTTTACATCATCGTAATCTTGTGAAACTAATCGGCATATGCATAGAAGGGCACAAACGATGCTTGGTGTATGAGCTTGTTCGCAATGGCAGCGTCGAGTCTCATTTGCATGGTGTTGATCAGATAAATGACCCTCTGGATTGGGAAGCACGGAAAAAAATTGCCCTTGGAGCTGCAAGAGGATTGGCCTATCTCCACGAGGATTCTAATCCTCATGTAATCCACCGAGACTTTAAAACTGGCAATGTGTTGTTAGAAGATGACTTCACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCAACCGAAGGAAGTCAATCTGTTCCTACAAGAGTCGTGGGGACTTTTGGGTATGTCGCCCCAGAATATGCAATGACAGGACGTTTGCTTGTTAAAAGCGATGTTTACAGTTATGGTGTTGTGCTGCTGGAACTTCTAACAGGAAGAAAGCCAGTGGACATGTCTCAACCTGTTGGGGAGGAGAATCTGGTGGTATGGGCACGACCACTATTGAAAAGTAGAGAGGGTTTAGAACAGCTGGTGGATCCGACATTGGCTGGAACTTATGACTTTGACGAAATGGCAAAGGTTGCTGCTATTGCTTCAATGTGTGTAAGCCTGGAGGTCTCTCAGAGACCCTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACAACGACAATGATGAGATGGACGTGGATCACTTGAGTCCGAGGGAATCTTCTGGTCGAGGGTCTGATTTTCGAGGCGACCTTTCTGATAGCAGTTGGTGGTATGATGAGCCTGTACTAACTCTTAGGCAAGCGGTATCATCGTCCTTCATCACAATGGATTACAGTTCCGGTCCACTTGATGAAGTGGAAAACAGAATGTTTTCAGGTTCAAACTTGATGGGAAATGGTTTGTCTTTATTACCAATTCGACTCGGCAATAGCTCAGGTCCCTTGAGAACAGCTAGAAGAAACAAGCTACCCTTTCATAGGCTTAATGGAAGTCAAAGTGATCATTCGGCATTTCCTTCCAAGCCTCTTGGGAATGGAGGTGACCGGCCTTGA 2187 0.4444 MSSTSLCILTVFLHLLLYSCSANLVSMSPSFASSKPAQVWMVKPFSGSSSDHRMYYAVAPSPSQTQACGLSCQEPLTETPFGSPCGCVLPMSVLLLLDAAPLVVYPVINELELELASGTYLKQSQVRIMGVIADTQNEGKSLVEVNLVPLGEKFDNITVVLISRRLWHKKVPLSRSLFGDYTVLETTYPGMPLSPLNGTSTGSAPLPSRSVAGFPFSVDFNGISKKDEMSLSTIIIIAVCSILLLLAMVGGAFYTILKCRKVRRPSSAPGLPFTQSLNKRSAMESSLSSRMTSSISMSHMSPIATSVLSVKKFSLSELTKATDTFSSEKILGEGGFGRVYHGRLDDGTDVAVKVLTKGFHQNGNHEFNVEVEMLCRLHHRNLVKLIGICIEGHKRCLVYELVRNGSVESHLHGVDQINDPLDWEARKKIALGAARGLAYLHEDSNPHVIHRDFKTGNVLLEDDFTPKVSDFGLAREATEGSQSVPTRVVGTFGYVAPEYAMTGRLLVKSDVYSYGVVLLELLTGRKPVDMSQPVGEENLVVWARPLLKSREGLEQLVDPTLAGTYDFDEMAKVAAIASMCVSLEVSQRPFMGEVVQALKLIYNDNDEMDVDHLSPRESSGRGSDFRGDLSDSSWWYDEPVLTLRQAVSSSFITMDYSSGPLDEVENRMFSGSNLMGNGLSLLPIRLGNSSGPLRTARRNKLPFHRLNGSQSDHSAFPSKPLGNGGDRP 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01235 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vifa3g01235 728 Gene3D Transferase(Phosphotransferase) domain 1 402 618 - -
Vifa3g01235 728 FunFam Receptor-like serine/threonine-protein kinase ALE2 402 614 - -
Vifa3g01235 728 Pfam Protein tyrosine and serine/threonine kinase 328 597 IPR001245 GO:0004672|GO:0006468
Vifa3g01235 728 ProSiteProfiles Protein kinase domain profile. 325 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01235 728 Gene3D Phosphorylase Kinase; domain 1 296 401 - -
Vifa3g01235 728 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vifa3g01235 728 CDD STKc_IRAK 331 601 - -
Vifa3g01235 728 SUPERFAMILY Protein kinase-like (PK-like) 299 601 IPR011009 -
Vifa3g01235 728 PANTHER OS01G0750732 PROTEIN 61 618 - -
Vifa3g01235 728 FunFam Somatic embryogenesis receptor kinase 1 295 401 - -
Vifa3g01235 728 MobiDBLite consensus disorder prediction 704 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01235 Vifa-Chr3 320785867 320789811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01235 72 628 Receptor kinase-like Gene Family AT5G56890 54.878 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa3g01235 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01235 - - gmx:100792309 895.19