Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01234 ATGTCGTCAACTTCTCTTTGCATTCTCACTGTTTTTCTTCATTTGCTGCTTTACTCCTGCTCAGCGAATTTGGTTTCTATGAGTCCCTCGTTTGCTTCGTCCAAACCAGCTCAAGTGTGGATGGTTAAACCCTTTTCTGGGTCATCTTCTGATCATAGGATGTATTATGCTGTGGCTCCTTCCCCTTCCCAAACCCAAGCATGTGGCCTAAGCTGCCAGGAACCACTCACAGAAACTCCCTTTGGTTCACCTTGTGGTTGTGTGCTTCCCATGAGTGTCTTGCTTTTACTGGATGCAGCTCCTTTGGTTGTTTATCCGGTAATTAATGAGTTAGAGCTTGAACTTGCATCTGGCACATATTTGAAGCAAAGCCAGGTGAGGATAATGGGTGTTATTGCTGACACTCAAAATGAAGGAAAAAGCTTAGTTGAAGTTAACCTGGTACCACTTGGTGAGAAATTCGACAATATAACTGTGGTTCTGATATCCCGGAGACTTTGGCACAAGAAAGTTCCTCTAAGTAGGAGTCTTTTCGGTGATTACACAGTCTTGGAGACTACTTATCCAGTATCAGGGATGCCATTATCTCCCCTGAATGGAACATCAACTGGGAGTGCTCCCCTTCCCAGCAGAAGTGTTGCAGGTTTCCCATTCAGCGTCGACTTTAACGGCATCAGCAAGAAGGATGAAATGAGTCTTAGCACCATAATCATCATTGCTGTATGTTCCATCTTACTCTTGCTGGCAATGGTTGGAGGAGCATTTTACACCATTTTAAAATGTAGGAAAGTCAGGAGACCATCAAGTGCGCCTGGCCTGCCATTCACACAGTCTCTAAACAAGAGATCTGCCATGGAGTCTTCATTGTCTAGCAGAATGACAAGCTCAATATCAATGTCCCATATGTCCCCCATAGCTACCTCTGTTCTTTCTGTGAAAAAGTTTTCCCTTTCTGAGCTTACGAAAGCAACAGATACGTTCAGTTCAGAAAAAATATTGGGGGAAGGAGGATTTGGGCGTGTTTATCATGGGAGATTAGATGATGGAACTGATGTTGCAGTTAAGGTACTAACAAAGGGTTTTCATCAAAATGGAAACCATGAATTTAATGTGGAAGTTGAGATGCTATGCCGTTTACATCATCGTAATCTTGTGAAACTAATCGGCATATGCATAGAAGGGCACAAACGATGCTTGGTGTATGAGCTTGTTCGCAATGGCAGCGTCGAGTCTCATTTGCATGGTGTTGATCAGATAAATGACCCTCTGGATTGGGAAGCACGGAAAAAAATTGCCCTTGGAGCTGCAAGAGGATTGGCCTATCTCCACGAGGATTCTAATCCTCATGTAATCCACCGAGACTTTAAAACTGGCAATGTGTTGTTAGAAGATGACTTCACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCAACCGAAGGAAGTCAATCTGTTCCTACAAGAGTCGTGGGGACTTTTGGGTATGTCGCCCCAGAATATGCAATGACAGGACGTTTGCTTGTTAAAAGCGATGTTTACAGTTATGGTGTTGTGCTGCTGGAACTTCTAACAGGAAGAAAGCCAGTGGACATGTCTCAACCTGTTGGGGAGGAGAATCTGGTGGTATGGGCACGACCACTATTGAAAAGTAGAGAGGGTTTAGAACAGCTGGTGGATCCGACATTGGCTGGAACTTATGACTTTGACGAAATGGCAAAGGTTGCTGCTATTGCTTCAATGTGTGTAAGCCTGGAGGTCTCTCAGAGACCCTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACAACGACAATGATGAGATGGACGTGGATCACTTGAGTCCGAGGGAATCTTCTGGTCGAGGGTCTGATTTTCGAGGCGACCTTTCTGATAGCAGTTGGTGGTATGATGAGCCTGTACTAACTCTTAGGCAAGCGGTATCATCGTCCTTCATCACAATGGATTACAGTTCCGGTCCACTTGATGAAGTGGAAAACAGAATGTTTTCAGGTTCAAACTTGATGGGAAATGGTTTGTCTTTATTACCAATTCGACTCGGCAATAGCTCAGGTCCCTTGAGAACAGCTAGAAGAAACAAGCTACCCTTTCATAGGCTTAATGGAAGTCAAAGTGATCATTCGGCATTTCCTTCCAAGCCTCTTGGGAATGGAGGTGACCGGCCTTGA 2193 0.4441 MSSTSLCILTVFLHLLLYSCSANLVSMSPSFASSKPAQVWMVKPFSGSSSDHRMYYAVAPSPSQTQACGLSCQEPLTETPFGSPCGCVLPMSVLLLLDAAPLVVYPVINELELELASGTYLKQSQVRIMGVIADTQNEGKSLVEVNLVPLGEKFDNITVVLISRRLWHKKVPLSRSLFGDYTVLETTYPVSGMPLSPLNGTSTGSAPLPSRSVAGFPFSVDFNGISKKDEMSLSTIIIIAVCSILLLLAMVGGAFYTILKCRKVRRPSSAPGLPFTQSLNKRSAMESSLSSRMTSSISMSHMSPIATSVLSVKKFSLSELTKATDTFSSEKILGEGGFGRVYHGRLDDGTDVAVKVLTKGFHQNGNHEFNVEVEMLCRLHHRNLVKLIGICIEGHKRCLVYELVRNGSVESHLHGVDQINDPLDWEARKKIALGAARGLAYLHEDSNPHVIHRDFKTGNVLLEDDFTPKVSDFGLAREATEGSQSVPTRVVGTFGYVAPEYAMTGRLLVKSDVYSYGVVLLELLTGRKPVDMSQPVGEENLVVWARPLLKSREGLEQLVDPTLAGTYDFDEMAKVAAIASMCVSLEVSQRPFMGEVVQALKLIYNDNDEMDVDHLSPRESSGRGSDFRGDLSDSSWWYDEPVLTLRQAVSSSFITMDYSSGPLDEVENRMFSGSNLMGNGLSLLPIRLGNSSGPLRTARRNKLPFHRLNGSQSDHSAFPSKPLGNGGDRP 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01234 730 MobiDBLite consensus disorder prediction 706 730 - -
Vifa3g01234 730 Gene3D Transferase(Phosphotransferase) domain 1 404 620 - -
Vifa3g01234 730 ProSiteProfiles Protein kinase domain profile. 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01234 730 FunFam Somatic embryogenesis receptor kinase 1 297 403 - -
Vifa3g01234 730 CDD STKc_IRAK 333 603 - -
Vifa3g01234 730 SUPERFAMILY Protein kinase-like (PK-like) 301 603 IPR011009 -
Vifa3g01234 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vifa3g01234 730 Pfam Protein tyrosine and serine/threonine kinase 330 599 IPR001245 GO:0004672|GO:0006468
Vifa3g01234 730 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Vifa3g01234 730 PANTHER OS01G0750732 PROTEIN 61 620 - -
Vifa3g01234 730 FunFam Receptor-like serine/threonine-protein kinase ALE2 404 616 - -
Vifa3g01234 730 Gene3D Phosphorylase Kinase; domain 1 298 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01234 Vifa-Chr3 320785867 320789811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01234 72 630 Receptor kinase-like Gene Family AT5G56890 54.688 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa3g01234 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01234 - - gmx:100792309 890.182