Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01227 ATGGCCACTGCTGCCAGTCCTATTGTTGGTTCCCAGGTTTGGGTGGAGGACTCTGATGTAGCTTGGATGGATGGTGAGGTCTTGGAGGTTAATGGGGAAGAAATAAAAGTCCTTTGCACTTCAGGAAAGAAGGTTACTGTTAAAGCTTCCAGTGTTTATCATAAAGATACAGAAGCCCCACCATGTGGAGTGGATGATATGACAAAGCTTGCTTACCTGCACGAACCTGGAGTTCTAGATAATCTGAGATCAAGATATGACATCAATGAAATTTATACTTACACTGGGAATATATTGATTGCCGTGAATCCTTTCATAAGGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGGCTTTGGTGAGCTAAGTCCACATCCTTTTGCTATTGCTGACTCGGCATATAGACTTATGATCAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACTGAAAGCACAAAGTTACTTATGCGCTATCTTGCTTACATGGGAGGGAGAGCTATTGTTTCTGAAGGTAGAACTGTTGAGCAGAAAGTCCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGAAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAAGGGAAGAATTTCTGGAGCTGCTATCAGAACTTACCTACTGGAAAGATCACGCGTTTGCCAGTTGTCAGATCCAGAAAGGAATTATCACTGTTTCTATATGCTTTGTGCTGCACCTCCAGAGGTTATTCAGAAGTATAAATTAGGAAATCCAAGAACATTTCATTATCTAAATCAAACAAATTGCTATGAGATAGAAGGGCTTGATGAGTCTAAAGAATATTTTGATACAAGAAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGAAGCCATATTTCGAGTGGTTGCTGCAATTTTACATCTTGGTAACATTGAATTTTCAAAAGGAGAGGAAATGGACTCATCTATGCCCAAAGATGAAAAATCTCAGTTTCATCTCCAGACCGCGGCTGAGCTTTTCATGTGTGATGCAAAGGCACTCGAAGATTCTCTTTGCAAGCGTGTAATTGTAACCCGTGATGAAAATATTGTAAAATGCCTGGATCCAGAAGCTGCTTCACTGAGCCGAGATGCTTTAGCTAAGACTGTGTACACGAGGTTGTTTGACTGGCTGGTAGATAAAATTAATAATTCAATTGGTCAAGATCCTGACTCAAAATCCTTAATCGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTCTGTATTAATTTGACAAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAGAAAGAGGAGATTGATTGGAGTTACATTGAGTTTGTAGATAATCAAGATATTTTGGATCTCATTGAAAAGAAACCTGGAGGCATTATTGCTCTTCTCGATGAAGCTTGTATGTTTCCTAGATCAACAAATGAAACTTTTGCGCAAAAGCTATACCAGACGTTCAAAAACCATAAAAGGTTCAGCAAGCCCAAATTGTCCCGCAGTGACTTCACAATTTGCCATTATGCTGGTGATGTCACGTATCAAACTGATTTATTCCTGGACAAGAACAAAGATTATGTTGTTGCAGAACATCAGGCACTTCTGTATGCTTCCACGTGCCCCTTTGTATCGGGTTTATTTCTCCCCTCACCCGAGGAATCGTCTAATAAATCGAAATTTTCTTCAATAGGTTCCCGGTTTAAGCAACAACTACAAGCTCTACTTGAAATTCTTAGTTCCACTGAGCCACACTACATTCGCTGTGTTAAACCCAATAATCTTCTCAAGCCAGCAATTTTTGAGCACAAAAATGTTCTGCAGCAACTGCGCTGTGGAGGTGTCATGGAGGCAATCAGGATAAGCTGTGCTGGCTTTCCCACCAGAAAAACATTTGATGAGTTCGTGGATCGATTCGGGCTTCTTGCACCTGAAGCTTTGGATCGTAGTTCTGATGAGGTCACTTCTTGCAAGAGGATTTTGGACAACGTTGGACTTAAAGGATATCAGATTGGTAAAACCAAAGTGTTTCTCAGATCTGGTCAAATGGCAGAACTAGATACTCGTAGAAGTGAGATCTTAGGAAAGTCAGCAAACGTTATTCAGAGGAAAGTTCGTTCCTATTTGGCCCGCCGAAGTTTTGTCTTGATTCGCTTATCTGCTGTACAGATACAAACTGCATGCAGAGGACAACTTGCTCGGAAAGTATACGAGGGATTGCGGCAGGAAGCTTCTAGTCTGATCATTCAGAAGTATTTCCGCATGCACATCGCCAGGAAGGAATACAAAGAATTTTACAGCTCAGCTATTTCTATTCAAACTGGTATGCGAGGGATGGCTGCTCGTTGTGAGCTGCGCTTTAGGAAGCAGACCAGTGCAGCTATTGTCATTCAGAGCCACTGCCGGAAATACTTGGCACAACACCATTTTATGAACCTAAAGAAGGCGGCAATTGCCACCCAATGTGCATGGAGAGGAAAAGTCGCTCGGCGAGAACTACGAAATCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAATAAACTTGAAAAGCAAGTTGAAGACCTTACTTTGAGGTTGACGTTGGAAAAACGCCGCAGGGTTGACATGGAAGAAGCAAAAAGACAAGAAAATGAAAAATTACAATCTGCTTTACACGAGATGCAACTTCAGTTCAAAGAAACTAAGTCATTGCTTCAAAAGGAGCGTGAGACTACAAAAAGAGAAGCAGAGAGAGTGTCTGTCATCCAGGAGGTTCCTGTTGTTGACCATCCTTTGTTGGAGAAGCTAACTAGTGAAAATGAGAAACTCAAGACCTTGGTGAGTTCACTGGAAAAAAAAATTGACGAAACAGAGAAAAGGTATGAAGAGACCAATAAAATCAGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCTGAATCAAAAATAATCCAATTGAAAACTTCTATGCAAAGGCTTGAAGACAAATTCTTAGATATGGAATCCGAAAACCAGGTTCTTCGGAAACAGTCTCTACTTAACTCATCTGTGAAAACAATGTCAGAGCACCTTTCTACCCATGTATATAAGAAGTTGGAAAATGGTCACCATGTGGTAGATGATCAGAAAGCTGCTGAAACACCGGTAGTCACACCTGTGAAACAATTTGGTACAGAATCTGATAGCAAATTAAGGAGATCCTACATTGAACGTCAACATGAAAATGTTGATTCCCTTGTAAATTGTGTTATGAAAAATATTGGATTCCAACATGGAAAGCCTGTTGCCGCTCTCACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATTGAGAACCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATACGTCTGCACTATTGTTTCTGCTCCAACAAAGTTTAAAGTCAGGTGGTTCAACTGATGCAACCCCAGTAAGAAAACCACCAAATCCCACATCCCTCTTTGGAAGAATGACCATGCCTGAATTGCAGGGTTTTCGATCATCTCCTTCTTCTGCCAACCTTCCTGCCCCCTTGGAGGTTGTACGCAAAGTAGAGGCTAAGTATCCTGCTTTGCTTTTCAAGCAACAGCTCACTGCCTATGTTGAGAAAATATATGGTATCTTGCGGGACAACTTGAAGAAAGAGTTGACATCATTTACTTCATTATGTATCCAGGCACCAAGAACATCAAAGGGAGTCTTAAGATCTGGTCGATCATTTAGTAAAGATTCTCCCATGGGTCACTGGCAGAGTATTATTGAATCCCTCAACACCTTTCTCTGTACTATGAAAGAGAACTTTGTGCCTCCTGTCCTTATCCAAAAGATCTTCTCTCAAACATTTTCATATATTAATGTTCAATTCTTCAATAGTCTTCTTCTGCGGCGTGATTGTTGCACATTCAGCAATGGAGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGCTGTGGTGCTGCCAAGCAAAGGAGGAGTATGCTGGAACATCTTGGGATGAGCTCAAGCACATAAGACAGGCGGTTGGATTCTTGGTTATTCATCAGAAATATAGGATTTCCTATGATGAAATCATCAACGATTTATGCCCTATCATGAGTGTCCAGCAGCTGTACAGAATATGCACACTTTACTGGGATGCTAACTACAACACTCGAAGCGTATCTTCAGATGTCCTTGCAAGCATGAAAGTACTCATGGCTGAGGATTCTAACAATGCTCAGAGTGATTCTTTCTTGTTAGATGACACTTCCAGCATCCCATTCTCAGTTGATGACCTCTCTACATCACTGCAAGAGAGAGATTTTTCTGAGATGAAACCAGCAGATGAGCTTCTTGAGAATCCCGCCTTCCAATTTTTGAACGAGTAG 4551 0.4094 MATAASPIVGSQVWVEDSDVAWMDGEVLEVNGEEIKVLCTSGKKVTVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIRLPHLYDSHMMAQYKGAGFGELSPHPFAIADSAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAIVSEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEVIQKYKLGNPRTFHYLNQTNCYEIEGLDESKEYFDTRRAMDVVGISSEEQEAIFRVVAAILHLGNIEFSKGEEMDSSMPKDEKSQFHLQTAAELFMCDAKALEDSLCKRVIVTRDENIVKCLDPEAASLSRDALAKTVYTRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTNETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTDLFLDKNKDYVVAEHQALLYASTCPFVSGLFLPSPEESSNKSKFSSIGSRFKQQLQALLEILSSTEPHYIRCVKPNNLLKPAIFEHKNVLQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEALDRSSDEVTSCKRILDNVGLKGYQIGKTKVFLRSGQMAELDTRRSEILGKSANVIQRKVRSYLARRSFVLIRLSAVQIQTACRGQLARKVYEGLRQEASSLIIQKYFRMHIARKEYKEFYSSAISIQTGMRGMAARCELRFRKQTSAAIVIQSHCRKYLAQHHFMNLKKAAIATQCAWRGKVARRELRNLKMAARETGALQAAKNKLEKQVEDLTLRLTLEKRRRVDMEEAKRQENEKLQSALHEMQLQFKETKSLLQKERETTKREAERVSVIQEVPVVDHPLLEKLTSENEKLKTLVSSLEKKIDETEKRYEETNKISEERLKQALDAESKIIQLKTSMQRLEDKFLDMESENQVLRKQSLLNSSVKTMSEHLSTHVYKKLENGHHVVDDQKAAETPVVTPVKQFGTESDSKLRRSYIERQHENVDSLVNCVMKNIGFQHGKPVAALTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLSNTSALLFLLQQSLKSGGSTDATPVRKPPNPTSLFGRMTMPELQGFRSSPSSANLPAPLEVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELTSFTSLCIQAPRTSKGVLRSGRSFSKDSPMGHWQSIIESLNTFLCTMKENFVPPVLIQKIFSQTFSYINVQFFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGTSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSSDVLASMKVLMAEDSNNAQSDSFLLDDTSSIPFSVDDLSTSLQERDFSEMKPADELLENPAFQFLNE 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01227 1516 Gene3D - 834 883 - -
Vifa3g01227 1516 Gene3D - 786 833 - -
Vifa3g01227 1516 Gene3D - 736 785 - -
Vifa3g01227 1516 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 Coils Coil 973 1049 - -
Vifa3g01227 1516 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Vifa3g01227 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 884 IPR027417 -
Vifa3g01227 1516 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Vifa3g01227 1516 Gene3D Kinesin motor domain 65 663 IPR036961 -
Vifa3g01227 1516 FunFam Myosin heavy chain 253 308 - -
Vifa3g01227 1516 FunFam Class V myosin 440 578 - -
Vifa3g01227 1516 CDD MYSc_Myo11 76 721 IPR036018 -
Vifa3g01227 1516 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Vifa3g01227 1516 FunFam Myosin 2 313 426 - -
Vifa3g01227 1516 FunFam unconventional myosin-Va 835 882 - -
Vifa3g01227 1516 CDD MyosinXI_CBD 1109 1485 IPR037975 GO:0007015
Vifa3g01227 1516 ProSiteProfiles IQ motif profile. 809 836 IPR000048 GO:0005515
Vifa3g01227 1516 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 PANTHER MYOSIN 830 1450 - -
Vifa3g01227 1516 SMART iq_5 758 780 IPR000048 GO:0005515
Vifa3g01227 1516 SMART iq_5 735 757 IPR000048 GO:0005515
Vifa3g01227 1516 SMART iq_5 831 853 IPR000048 GO:0005515
Vifa3g01227 1516 SMART iq_5 783 805 IPR000048 GO:0005515
Vifa3g01227 1516 SMART iq_5 806 828 IPR000048 GO:0005515
Vifa3g01227 1516 SMART iq_5 854 876 IPR000048 GO:0005515
Vifa3g01227 1516 Gene3D - 667 734 - -
Vifa3g01227 1516 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Vifa3g01227 1516 FunFam unconventional myosin-Va 786 834 - -
Vifa3g01227 1516 Gene3D - 253 311 - -
Vifa3g01227 1516 ProSiteProfiles Myosin motor domain profile. 62 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 SMART DIL_2 1337 1444 IPR002710 -
Vifa3g01227 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 786 IPR027417 -
Vifa3g01227 1516 Pfam DIL domain 1338 1441 IPR002710 -
Vifa3g01227 1516 Coils Coil 878 944 - -
Vifa3g01227 1516 ProSiteProfiles Dilute domain profile. 1158 1462 IPR002710 -
Vifa3g01227 1516 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Vifa3g01227 1516 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Vifa3g01227 1516 Pfam IQ calmodulin-binding motif 762 779 IPR000048 GO:0005515
Vifa3g01227 1516 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Vifa3g01227 1516 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Vifa3g01227 1516 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Vifa3g01227 1516 Gene3D - 440 624 - -
Vifa3g01227 1516 SMART MYSc_2a 57 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g01227 1516 Pfam Myosin head (motor domain) 64 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01227 Vifa-Chr3 319287843 319315998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01227 1 1515 Myosins gene family AT5G43900 73.504 0.0 2315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01227 K10357 - gmx:100791070 2702.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01227 3 319287843 319315998 Vifa3g01227 3 319287843 319315998 ECH
Vifa5g02799 5 924951898 924962929 Vifa3g01227 3 319287843 319315998 PCT
Vifa5g03931 5 1255956473 1255967840 Vifa3g01227 3 319287843 319315998 PCT