LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g01217	ATGGCAGAATCTCTTGTCTTCAGTCTCGCCGAGTCATTCATCAGTAAGCTTGCTTCTCGTGCCGTTGAAGAAACTTCCCTAGCGTTGGGTGTCTACAACCATCTGCGAGAGATAAAAGACACCGTCTCTCTTATCAAAGCTATCAAGCATGTCTTCTCCATCGCCGAAGATGTAATCGACGATTTCGAGTGCGAGGCTTTGAGGAAGCGTGTGGTCAACTCTTCAGGTACCGTGACTAGGAAGGTACGACGTTTCTTCTCAAGTTCAAATCCTCTTGTTTATCGCCTTAAGATGGCACATAAAATCAAACATATCAAAGAGAAATTCGATAAGGTTGCTTCTGATAGGGTTAAGTTTGGTCTTCAGATCAATGATAGTGATAACCGTCTTGTAAAAAGGCGGGAGTTAACTCATTCCCACGTAATAGATTCAGATGTAATAGGAAGAGATTACGATAAACAAAAAATCATTGATCTCTTGTTGCAAGGTGATAAAGGTGTTTCTGTTATTCCTATTGTTGGAATTGGAGGCTTGGGAAAGACTACTCTTGCAAAGGCGGTATTCAATGATAAAAGTGTAGATGAGTCTTTTTCGTTGAAGATTTGGGTATGTGTGTCTGATGATTTTGAACTTGAGCATTTACTTGTTAAAATTCTCAATTCAGCTAGTGTTAGTGATTCTGCTACTAACTTAACTCACAAAGAGAACTTTAGAAACCTTGATATAGAGCAGCTACAACATCATTTGCGAAACACAGTTGGTGGTAAAAAAATCTTGCTCGTCTTGGACGATGTATGGAACGAAGATCGTGTCAAATGGGTTGAGTTGAATAATTTAATCCAATTTGGGGATGATGGAAGTAAAGTTTTAGTGACTACGCGTAGCCATGCAATCGCTAAAATGATGAGCACTAACACAACTTACATTTTGCAAGGTCTTTCTAGCAAGGACTCACTGTCTGTATTTGTCTACTGGGCCTTTAAAGATGGAGAGGACACAAATTATCCAGAGTTGATGAAGATTGGGAAAGAAATTGTACAAAAATGTGGAGGAATTCCTTTGGCTCTAAGAACATTGGGGAGTTCATTGTTCTTAAAAATTGATATACAAGAGTGGAAGTTTGTTAGGGACAATGAGATTTGGAGTTTACCACAAAAAGAAGATACAATTTTGCCTGCTATCAAACTAAGTTATGACCAATTACCTTCTTATTTAAAACAATGTTTTTCTTGCTTCTGTCTTTTTGAAAAGGACTTCCATTTCTTAAATATTCATCTTACTGGCTTTTGGGAGGCACTTGGTTTTCTTCCATCACCAAATAGGGGGGAATCCGTGGAAGATGTTAGCAATCGCATTTTGCACGAACTTTGGTCAAGATCCTTTCTTCAAGACTTTGTAGTCCTCGGCAGTTCATGTAAGTTTAAGTTGCATGATTTAGTGCACGATCTTGCTTTGTATGTTGCAAAACATGAGTTTCAATTGGTGAAATTTCATAATGAAAATGTACTCGAGAATGTCCTCCATTTGTCATTTTTTGAAAATGATTTGCTTGGCCCAACACCAATGCCCACTAGATTGAGAACCATAGTTTTTCCTATAGAAGCCAACAATGAAGCTTTCTTGAATACTTTGACATCAAGGTGTAAATTCTTGCGGATTTTGAAGCTAACTGATTCTACATATGAGAGTTTGCCCGGCTCCATTGGTAAATTAAAACATTTGAGATATCTCAATTTGGCGCGTAATAAAGAATTGAAGAGCCTCCCTAATTCAATTTGCAAACTCCAGAATTTGATAACTTTGAAGCTCGATGGATGCACAAAACTTGAAATATTACCCAATGGAATAGGGAATTTGATCAGCCTTAGACAGTTATGGATAACCACAAAGCAGTCTAATTTTCCAAACAAAGAGATTTCAAAATTGGCTAATTTAGAATTGCTATCTATCTCTTCTTGTGACAATTTGGAGTCACTGTTTCAAGGAATCCAGCTTCCCCGTCTTAAATGTTTGAATATTTCTTTGTGTGAGAATCTTAAGTCTCTTCCACTTCATGCTATTGTCAACCTAGAGACTTTGTTGATTGGTAATTGCAATAAGTTGAATTTGTCATTTGACCATGACAATGAAATCTCCAATCTAAGGTTGAAGTTGCTATGTCTTGATTCTTTGCCTCAACTGGTTAGTAGTATTCCACAATGGTTGCGAGGATGTGCAAACACATTACACACTTTGAAAATCGATAACTGCGAGAATTTATATAAACTTCATGAGTGGTCATTGACTCTGGTTTGTCTTAATATACTTGTGATTAGAAACTGTTCTAAACTGGTTTCGCTCACTGATGATACATGTTTCCTTCCAAACCTTGAAGTTTTAGTAATTGTAGGTTCTCCTGAATTACTTGGAAGATATCAGCCAGGAGTTGGATGTGATTGGCACAAGATATCACATATTAAACAAGTGTACATTGAATAA	2478	0.3729	MAESLVFSLAESFISKLASRAVEETSLALGVYNHLREIKDTVSLIKAIKHVFSIAEDVIDDFECEALRKRVVNSSGTVTRKVRRFFSSSNPLVYRLKMAHKIKHIKEKFDKVASDRVKFGLQINDSDNRLVKRRELTHSHVIDSDVIGRDYDKQKIIDLLLQGDKGVSVIPIVGIGGLGKTTLAKAVFNDKSVDESFSLKIWVCVSDDFELEHLLVKILNSASVSDSATNLTHKENFRNLDIEQLQHHLRNTVGGKKILLVLDDVWNEDRVKWVELNNLIQFGDDGSKVLVTTRSHAIAKMMSTNTTYILQGLSSKDSLSVFVYWAFKDGEDTNYPELMKIGKEIVQKCGGIPLALRTLGSSLFLKIDIQEWKFVRDNEIWSLPQKEDTILPAIKLSYDQLPSYLKQCFSCFCLFEKDFHFLNIHLTGFWEALGFLPSPNRGESVEDVSNRILHELWSRSFLQDFVVLGSSCKFKLHDLVHDLALYVAKHEFQLVKFHNENVLENVLHLSFFENDLLGPTPMPTRLRTIVFPIEANNEAFLNTLTSRCKFLRILKLTDSTYESLPGSIGKLKHLRYLNLARNKELKSLPNSICKLQNLITLKLDGCTKLEILPNGIGNLISLRQLWITTKQSNFPNKEISKLANLELLSISSCDNLESLFQGIQLPRLKCLNISLCENLKSLPLHAIVNLETLLIGNCNKLNLSFDHDNEISNLRLKLLCLDSLPQLVSSIPQWLRGCANTLHTLKIDNCENLYKLHEWSLTLVCLNILVIRNCSKLVSLTDDTCFLPNLEVLVIVGSPELLGRYQPGVGCDWHKISHIKQVYIE	825

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g01217	825	PRINTS	Disease resistance protein signature	169	184	-	-
	Vifa3g01217	825	PRINTS	Disease resistance protein signature	640	656	-	-
	Vifa3g01217	825	PRINTS	Disease resistance protein signature	349	363	-	-
	Vifa3g01217	825	PRINTS	Disease resistance protein signature	252	266	-	-
	Vifa3g01217	825	PANTHER	DISEASE RESISTANCE PROTEIN RP	35	795	IPR044974	GO:0006952
	Vifa3g01217	825	SUPERFAMILY	L domain-like	470	817	-	-
	Vifa3g01217	825	Gene3D	Ribonuclease Inhibitor	522	814	IPR032675	-
	Vifa3g01217	825	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	128	411	IPR027417	-
	Vifa3g01217	825	Gene3D	-	392	486	IPR036388	-
	Vifa3g01217	825	Gene3D	-	128	310	IPR027417	-
	Vifa3g01217	825	Pfam	NB-ARC domain	150	399	IPR002182	GO:0043531
	Vifa3g01217	825	FunFam	Probable disease resistance protein At1g61300	128	307	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g01217	Vifa-Chr3	316512370	316514910	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g01217	167	798	WRKY Transcription Factor Family	AT5G45050	24.890	4.17e-19	90.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g01217	-		-	gmx:100780033	958.362