Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01193 ATGGGAGAAGAAGCTGTTTGTTTGCAAGCATTGGAAGATGGAAGAACGGAAAATAATGAGGTTCAGAAGGCGGAGCTGAAACGTGACTATCACCAATGTGTTGCGGATATTGAACCACCGGATGTTTCTCCGAATAAAAAACAAGCAAAAGAGGTTTCTAATGACGAAGTGCGTTCTGAAGTTTCGAATCCAAATGTTTCTGCGACGGAACACGCGCTAACCTTTCATGATATCAGTAGCCAACCTACGGAAACAGAAAACGTCAACCATGCAGAATGCGGTGAACTAACGTCTACTTGTTTGGAGAATTCTAGTTCTCATGACACTCTTAGCGATGAGGCTGTTGATAGGAATAATGATAATAACAATAATACTTCTCTGTATGATAAAAGCACTAGTAGTAAGGATGCAGTGATGTCCCGTGTTGTGATGGAAATCCCGAAGCATGTTAGTTCGACTGGAATAAGAAAAATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATTATCAAACACCCGCAGGCTATACTGATGGCTATGGCAATGGCTATCACGGGGATGATGAATATTTGGCAAAGGATGATTATAATAGTGGCTTGTTAGAGAGCTCATATGGCATGGGATATCTTCCTGATGGATATATGGAATCGTATTCTGGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTCCCTAACTGCTTCCCCACAAATGTCAAAAAGCTCTTAGCAACTGGTATCCTTGATGGAGCTGCAGTGAAATATATTTACAACCCTGGAAAGGTTGAGCTGGAAGGGGTTATTGGTAGCGGTGGATATTTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTCGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATACATGAAATAAAAACTGCTCCAAACAGCATGCCAGATGAGATTATAAAGAATGTGGCCGGTTCATCTATCAACGAGGAAACCTTCCAGGTTTGGAAAGAAAGTCTTCTAGAAAGCAACAGGAAGGTTCCACCTCATAAAAATTACATTACAAAGTTTACTGGCATGCCTCATACAAACAACAGTCAATTTATAGAAAGTGAAAGCCCTTTCTTATATTCCCGTGTACGGAATCATTTTGAACCGCAAATGTATGTGAACCAGACATCTGATGAGTGGAAACGTGTGGTGAAGAAGCCAAGCACCTACACTTACCCCTCAGGCATACTGCAGAAGAGGAGTACTGATGGCTGCACTAAGAAAAGGGACAACGATTTACACAGGTTACTTTTTCTGCCTAATGGCCTACCAGATGGTGCTGAGTTAGCTTACTATGTCAAAGGACAGAGATTACTTGGAGGTTACAAACAAGGAAGTGGTATAGTATGCAGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCAGCTAGACGTCAACCTTATCGCCACATATATACTTCCAATGGATTAACGCTTCACGATATAGCTCTCTCTTTGGCAAATGGTCAAAACCTTACTACAGGAGATAGTGACGATATGTGTGCAATATGTGGAGATGGGGGAGATTTGATTCTTTGCAATGGATGTCCTAGGGCCTTTCATGCAGCCTGCCTGGGTTTACACACTGTACCCGCAAGTGGTTGGCATTGCCTAAATTGTAAAGATAATACTGATGATGAAAGAGGTGTGAGACCCATCATGATACGGTTGACACGAGTTGATAAAGAACCAGAATATGAAATGGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGATAAATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGAAACATTGGGCTATGTGAGTTAGAAGAGCTACCCAAAGAAAAGTGGTTTTGTTGTGACGACTGCAGTCGAATATATGTGGCTCTACAGACTTCAGTTTCTGCTGGAGCAGATACTATACCCACTCCCTTGTCTGAACTAATAATCAGGAAGCACAAGGAGAGGGGGTTGTGTACATATGGATTCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAGCATTTACCGTTGCTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATCGTCGCAATATCTGGCCGTGACCTGATTCCTGTTATGGTTTATGGGAGAAATATTTCTGGCCAAGAATTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTATTGTAGTATCTGCCGGGCTTCTCAGGATTTTTGGCCGAAATATTGCTGAGCTTCCCCTGGTAGCTACAAGTAGAGAGTATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCTTGCATAGAGAGGTTGTTGTTTTCTCTAAATGTAGAAAAGCTGGTTCTCCCTGCTGCAGGGGATGCAGAGTCAATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTATCCAAATATCTTAAAGAGGTACAGCTCACCCTCTTCAACAAAACTTCAGTGCTGGAGAAGACTGTGCAGCTTGCGACAGAATGA 2643 0.4128 MGEEAVCLQALEDGRTENNEVQKAELKRDYHQCVADIEPPDVSPNKKQAKEVSNDEVRSEVSNPNVSATEHALTFHDISSQPTETENVNHAECGELTSTCLENSSSHDTLSDEAVDRNNDNNNNTSLYDKSTSSKDAVMSRVVMEIPKHVSSTGIRKITFKFSKKKEDYDYQTPAGYTDGYGNGYHGDDEYLAKDDYNSGLLESSYGMGYLPDGYMESYSGNMELKMSKKVVPNCFPTNVKKLLATGILDGAAVKYIYNPGKVELEGVIGSGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTAPNSMPDEIIKNVAGSSINEETFQVWKESLLESNRKVPPHKNYITKFTGMPHTNNSQFIESESPFLYSRVRNHFEPQMYVNQTSDEWKRVVKKPSTYTYPSGILQKRSTDGCTKKRDNDLHRLLFLPNGLPDGAELAYYVKGQRLLGGYKQGSGIVCSCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLHTVPASGWHCLNCKDNTDDERGVRPIMIRLTRVDKEPEYEMGGCVVCRENDFSVDKFDDRTVIICDQCEKEYHVGCLRNIGLCELEELPKEKWFCCDDCSRIYVALQTSVSAGADTIPTPLSELIIRKHKERGLCTYGFMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNIAELPLVATSREYQGKGYFQVLFSCIERLLFSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLSKYLKEVQLTLFNKTSVLEKTVQLATE 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01193 880 CDD PHD1_AIRE 538 578 - -
Vifa3g01193 880 CDD NAT_SF 768 829 - -
Vifa3g01193 880 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 759 850 IPR016181 -
Vifa3g01193 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 667 IPR013083 -
Vifa3g01193 880 ProSiteProfiles Zinc finger PHD-type profile. 606 667 IPR019787 -
Vifa3g01193 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 526 596 IPR013083 -
Vifa3g01193 880 FunFam PHD zinc finger protein 607 667 - -
Vifa3g01193 880 ProSitePatterns Zinc finger PHD-type signature. 609 664 IPR019786 -
Vifa3g01193 880 PANTHER AUTOIMMUNE REGULATOR 15 874 - -
Vifa3g01193 880 Gene3D - 706 873 - -
Vifa3g01193 880 FunFam PHD zinc finger protein 756 863 - -
Vifa3g01193 880 MobiDBLite consensus disorder prediction 116 134 - -
Vifa3g01193 880 ProSiteProfiles Zinc finger PHD-type profile. 536 581 IPR019787 -
Vifa3g01193 880 Pfam PHD-finger 538 580 IPR019787 -
Vifa3g01193 880 SUPERFAMILY FYVE/PHD zinc finger 604 661 IPR011011 -
Vifa3g01193 880 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 526 601 - -
Vifa3g01193 880 MobiDBLite consensus disorder prediction 36 65 - -
Vifa3g01193 880 MobiDBLite consensus disorder prediction 43 57 - -
Vifa3g01193 880 MobiDBLite consensus disorder prediction 102 134 - -
Vifa3g01193 880 SUPERFAMILY FYVE/PHD zinc finger 534 581 IPR011011 -
Vifa3g01193 880 SMART PHD_3 608 665 IPR001965 -
Vifa3g01193 880 SMART PHD_3 538 579 IPR001965 -
Vifa3g01193 880 Pfam Tify domain binding domain 267 318 IPR032308 -
Vifa3g01193 880 Pfam Tify domain binding domain 472 521 IPR032308 -
Vifa3g01193 880 ProSitePatterns Zinc finger PHD-type signature. 539 578 IPR019786 -
Vifa3g01193 880 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 717 867 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01193 Vifa-Chr3 308675253 308684543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01193 1 880 PHD Transcription Factor Family AT3G53680 53.208 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa3g01193 TDBD 5.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01193 - - tpra:123904992 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01193 3 308675253 308684543 Vifa3g01193 3 308675253 308684543 ECH
Vifa3g01193 3 308675253 308684543 Vifa5g00323 5 52333820 52337807 ECH