Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01187 ATGGAAAATCTTCCTAAACAATTGATTGGAACTCCGATTAAGAAGTTATTAGCGGAAGAGATGTCACCAATGACTGAATCCAAGAGAAGATCCCCAGGGGTTATAGCCAGATTGATGGGTCTTGATGGGCTTCCGTCCCAGCATCCTGGAGAAGCTCAAGGGATCATGAAGAATTTAAGGATGTATTTGAGGGTCTCAGAGATCCCAAAGGTAGAGAGTGGTAGGCATTCGTCTTCTGACTTGAAGGTTCATGTTGATGAAGATGAAATGTCATTCATTGAACAGAAGTTCATGGATGCCAAACGCCTTGCAACTTATCAGGATTATCAGTCTCAAAGGAATTCCATGAGACACTTGAGGTTTTGGACGTCGAACAAGGATCTTCTGCTAAAATATCTTAAGCAGCCAGATTCTTTGTTTAAAAAGCATTTGAATGATCTACAAGATAAGGAGGCACAACATGTGAATTACAATAGGTTTCATCAGAAGCACTCTGATGATTATCACAACCAATTTGACAAAAGGCGTGTGATGCAGAATTCACCAAGATCATTGAAGCACCGGTTTAAGGGTAGCCGTGAACAATCTGCAGTCCCAACAAATATTGTTGTCCTAAAACCAAACATTGGAAAATTACAGAATGGTACCAAAATTCAGTCATCACCTTGTTCTCCGCATAGCTTTCTGTCAGAACATGGAAATCAAGTGAATTTTCAGATGTCAGATTTAGAGATACTGAATTGTATCAAAAAATTAATTTGCCTGACAGTGCCAGGTCTTTTAGGCACAATTCCTTTAGAATCTACAGAAATTGCAAAAGAACATGCAAGTGGGGGAGGTTTCCATGACAAGTTTGCTCGCAATGGTGAACCTTCTGGGTGGGTTGAACCACTGGGTATCAGCAGCAAGGATGGTTGGAGGGATGCATCTATTGGAAGTTTGTCGAGGTCAAAATCTCTTCCTGCTTCATCTACTGTTTTTGGAAATGCTAGAACGTTGTGGTGTGCTGAAGCCATTCGTAATGATCGATATATGGGGCTAAAGGACCTTAAACGGGAGAGGAGAAGAGCTACAATGAGTCTTGATCATAGACACGGTTTGAATTCTAGGAGCACTATATCTGGTCACAAGAAGTCTTGGTCTTTGCTTTCATCGAAGCAGGGAATTAATGAGTTCTCTCCAGACTTAAATGCAGTTCAAAATAACATAATGACCAATCTTGAAGAAGATTCACCCAATCTAGAGGTTCATTCTCCTGAAACCTTTGGCCATCGCCTTAGAAATACAAGTGTTATTAGTGATGATGTCGTGGATGTAGCAAATGGAAACACAGTTGTGCCTTTTGAACCTTCTTCGGATAAATTGCTTCCTGGAACATCGTCCCGTGTGTTAATAAAAGGAGACAGTAGTGTTGTTGAAGACAATTCAATGCAAGAGGAAATATCAGCTGGTTCTACTGGTGAAATTTCAATCCTCTCTGAAGCACCTGCACCCGGATTTGAATCTCCATGCTGTAAAGATGCTGATCAGCCCAGTCCAATCTCAGTTCTAGATCCTTCTTTTACAGATGACGTGTCATCTTGTTCTGAATGTTTTGGAAGTGTCAGTGCAGACCTACAAGGGCTTAGAATGCAACTCCAGTTGCTGAAGTTAGAATCTGAAGAACAAGTGGAGGGACCTATGCAAATTTCAAGTGATGAAGATGTGGAAGCATATGGTGAAATGTTAGAAGAAAATGCATTACGGAGAACCGAAGATAGCTGGGAGTCTTCTTACATTACTGATGTCTTGTCTGAATCTGCTATCACTAAGGCACAAACTCATAATATTTTGGAAGTTTGGCATTCTCTAGAATGCCCCGTGAGTCTGTCCGTGTTCGAAGAGCTTGAAGATAGGCACATTGATTGTACTGTTTGTTCAAGGTCTGAAAGGAGATTGCTTTTCGACCGCATCAATTCAGGAATTGTCAAGATTCATGAGCAATCTACCGACCCACAACCATGGGTGGGTAGTAATGCAGGCAAAACTTTTGGATCAAAAAGGATTAATGGGCTGCAAGTTGGTCTTTTCCAGATGATAGGGAACCATGGAAAGGTAGAGGATGATGTCCTGGGTAAGTTGCTGGTTGTGGAGTCTCAGTGGTTGAACTTGAGAGATGACATTGATGTAATAGGAAGAGAAGTTGAGATATTGATATTAGATGATTTAGTGGCCGAAATAGTTGGTATCTAG 2232 0.4113 MENLPKQLIGTPIKKLLAEEMSPMTESKRRSPGVIARLMGLDGLPSQHPGEAQGIMKNLRMYLRVSEIPKVESGRHSSSDLKVHVDEDEMSFIEQKFMDAKRLATYQDYQSQRNSMRHLRFWTSNKDLLLKYLKQPDSLFKKHLNDLQDKEAQHVNYNRFHQKHSDDYHNQFDKRRVMQNSPRSLKHRFKGSREQSAVPTNIVVLKPNIGKLQNGTKIQSSPCSPHSFLSEHGNQVNFQMSDLEILNCIKKLICLTVPGLLGTIPLESTEIAKEHASGGGFHDKFARNGEPSGWVEPLGISSKDGWRDASIGSLSRSKSLPASSTVFGNARTLWCAEAIRNDRYMGLKDLKRERRRATMSLDHRHGLNSRSTISGHKKSWSLLSSKQGINEFSPDLNAVQNNIMTNLEEDSPNLEVHSPETFGHRLRNTSVISDDVVDVANGNTVVPFEPSSDKLLPGTSSRVLIKGDSSVVEDNSMQEEISAGSTGEISILSEAPAPGFESPCCKDADQPSPISVLDPSFTDDVSSCSECFGSVSADLQGLRMQLQLLKLESEEQVEGPMQISSDEDVEAYGEMLEENALRRTEDSWESSYITDVLSESAITKAQTHNILEVWHSLECPVSLSVFEELEDRHIDCTVCSRSERRLLFDRINSGIVKIHEQSTDPQPWVGSNAGKTFGSKRINGLQVGLFQMIGNHGKVEDDVLGKLLVVESQWLNLRDDIDVIGREVEILILDDLVAEIVGI 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01187 743 Pfam DUF761-associated sequence motif 27 48 IPR032795 -
Vifa3g01187 743 PANTHER AFADIN 276 741 - -
Vifa3g01187 743 Pfam Protein of unknown function (DUF3741) 94 138 IPR022212 -
Vifa3g01187 743 Pfam Domain of unknown function (DUF4378) 590 739 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01187 Vifa-Chr3 306432924 306437132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01187 280 741 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 33.761 1.39e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01187 - - ccaj:109788117 553.132