Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01183 ATGATGAAGAGACAAAGAGAAAAAGAAGTAGAAAAAGAGAGCATAGACTTAGCAACAAGTCTAATGTTACTCTCTTCTCATGGTATCCAACAACACGAAAACAACAAAACATATTCTAAAATGGAGTTTGAGTGCAAAACTTGCAATCGCAAATTCTCATCTTTTCAAGCACTCGGTGGTCATAGGACAAGTCACAAGAAACTCAAACTTGAAGGAGATGAAACACAGAAAGGGTATGATCATACAAATAAGCAACCAAAAATGCATAAGTGTTCAATTTGTGGACAAGAATTCATATTGGGACAAGCTTTGGGAGGACATATGAGAAGACATAGAATTAATAATGAAGGGTTTTCTTCATCTTATATGAATTATCAAGTGATAGCAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGTAAAAGGGTTATGTGTTTAGAATTGGACTTGAATTTGACACCTTTAGAAAATGATTTGAAGTTCTTGTTTGGAAATAAAGCACCACGAGTAGATCACTCTTTATTTTGA 528 0.3371 MMKRQREKEVEKESIDLATSLMLLSSHGIQQHENNKTYSKMEFECKTCNRKFSSFQALGGHRTSHKKLKLEGDETQKGYDHTNKQPKMHKCSICGQEFILGQALGGHMRRHRINNEGFSSSYMNYQVIAKSSPVLKRSNSKRVMCLELDLNLTPLENDLKFLFGNKAPRVDHSLF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01183 175 PANTHER ZINC FINGER PROTEIN ZAT5 2 158 - -
Vifa3g01183 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Vifa3g01183 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Vifa3g01183 175 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Vifa3g01183 175 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Vifa3g01183 175 SMART c2h2final6 89 111 IPR013087 -
Vifa3g01183 175 SMART c2h2final6 43 65 IPR013087 -
Vifa3g01183 175 SUPERFAMILY beta-beta-alpha zinc fingers 43 111 IPR036236 -
Vifa3g01183 175 Gene3D Classic Zinc Finger 40 111 - -
Vifa3g01183 175 Pfam C2H2-type zinc finger 43 67 - -
Vifa3g01183 175 Pfam C2H2-type zinc finger 89 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01183 Vifa-Chr3 305293391 305293918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01183 2 171 C2H2 Transcription Factor Family AT3G53600 48.619 2.82e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01183 zf-C2H2_6 6.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01183 - - cam:101495964 236.113