Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01181 ATGATGAAGAGACAAAGAGAAAAAGAGGACATGTATTTAGCAACAAATCTAATGTTACTCTCTTCTCATCGTACCCATCAACACCAAAACAACAAAACATATTCTCAAGCTGAGTTTGAGTGCAAAACATGCAATCGCAAGTTCTCATCTTTTCAAGCACTTGGTGGTCATAGGACAAGTCACAAGAAACTCAAACGTGAAGGAGAACAAACCCTCAAAGGAAATAATCATGTTAATAAGCAACCTAAAATGCATAAGTGTTCAATTTGTGGACAAGAATTTAAATTGGGTCAAGCTTTGGGTGGACATATGAGAAGACATAGAAATAATAATGAAGGGTTTTCTTCATCTTATATGAATTATCAAGTGATTTCAAAATCTCATCCAGTTTTGAAAAGATCAAATAGTAAAAGCGTTATGTGTTTAGAATTGGACTTGAATTTGACACCTTTAGAAAATGACTTGAAGTTCTTGTTTGGAAATAAGGCGCCTCAAGTAGATCACTCTTTATTTTGA 516 0.3391 MMKRQREKEDMYLATNLMLLSSHRTHQHQNNKTYSQAEFECKTCNRKFSSFQALGGHRTSHKKLKREGEQTLKGNNHVNKQPKMHKCSICGQEFKLGQALGGHMRRHRNNNEGFSSSYMNYQVISKSHPVLKRSNSKSVMCLELDLNLTPLENDLKFLFGNKAPQVDHSLF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01181 171 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vifa3g01181 171 Gene3D Classic Zinc Finger 37 107 - -
Vifa3g01181 171 SMART c2h2final6 39 61 IPR013087 -
Vifa3g01181 171 SMART c2h2final6 85 107 IPR013087 -
Vifa3g01181 171 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vifa3g01181 171 Pfam C2H2-type zinc finger 39 63 - -
Vifa3g01181 171 Pfam C2H2-type zinc finger 85 108 - -
Vifa3g01181 171 PANTHER ZINC FINGER PROTEIN ZAT5 3 154 - -
Vifa3g01181 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Vifa3g01181 171 SUPERFAMILY beta-beta-alpha zinc fingers 39 107 IPR036236 -
Vifa3g01181 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01181 Vifa-Chr3 305182663 305183178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01181 2 167 C2H2 Transcription Factor Family AT2G37430 46.369 1.18e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01181 zf-C2H2_6 5.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01181 - - cam:101495964 228.024