Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01179 ATGCCGGCAGGACATGGGTTGCGATCTCGCACGAGGGATTCATTTTCCCGCCCATTCAGGAAGAAGGGGGTAATCTCCCTAGCAACATACCTCCGAACATACAAAATCGGCGATTATGTTGATGTTAGAGTTAACGGCGCAGTTCACAAAGGTATGCCTCACAAGTTCTACCATGGTCGTACCGGTCGTGTCTGGAACATCACCAAACGCGCCATCGGTGTCGAGGTTAACAAACAGGTTAGGAATAAGATTCTGAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGATGCCTTCAAGGTGCACTGAGGAGTTTCGTTTGAGGAAGATTCAAAATGACAAGCTCAAGGCTGAGGCGAAGGCGAAGGGTGAGGTTATTAGCACGAAGCGCAAACCGGAAGGACCTAAGCCTTGTTTCAAGGTTGAAGGAGCTGCTTTGGAAACGGTTACTCCAATTCCTTATGATGTGGTTAATGATTTGAAGGGAGGGTATTAG 495 0.4828 MPAGHGLRSRTRDSFSRPFRKKGVISLATYLRTYKIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNITKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIQNDKLKAEAKAKGEVISTKRKPEGPKPCFKVEGAALETVTPIPYDVVNDLKGGY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01179 164 FunFam 60S ribosomal protein L21 99 158 - -
Vifa3g01179 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Vifa3g01179 164 Gene3D - 99 156 - -
Vifa3g01179 164 FunFam 60S ribosomal protein L21 1 98 - -
Vifa3g01179 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Vifa3g01179 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 163 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vifa3g01179 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vifa3g01179 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01179 Vifa-Chr3 304980618 304981112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01179 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 79.878 3.58e-100 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01179 K02889 - zju:125419448 308.916