Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01178 ATGAAAAGGAAGAGAGAAGAAAGAGTAGATAACATAGATTTAGCAAATTGTTTAATTCTACTCTCTCATCCTAAAGAAACCAAACCAAAGAAACATTTTGGTCCTGTTGAATTTGAGTGCACCACATGCAAGCGTAAATTCTCTTCATTTCAAGCCCTAGGTGGCCATAGGGCTAGTCACAACAAACCCAAACTAGATGCCACAAAACTCAAACTAGAGGCACAAAATTTGAGTTTATTTAACAAGTCCAAAATGCATGGTTGCTATATTTGTGGTAAAGAGTTCTCTTTAGGCCAGGCTTTGGGAGGACATATGAGAAGGCATAGAATTGGTGTCAATGAAGAATTATCTTTGATGAAGGAAATTAAGAGTGTTGGAGAAGTTCCAATATTGAAAAGATCAAATAGTAAGAGGGTTATGTGTTTGGACTTGAACTTAACACCTTTGCAAAATGACTTGAAGTTATTGTTTGGAAATATGGCACCTAAAGTTGATTCCTTTGTCTGA 507 0.3609 MKRKREERVDNIDLANCLILLSHPKETKPKKHFGPVEFECTTCKRKFSSFQALGGHRASHNKPKLDATKLKLEAQNLSLFNKSKMHGCYICGKEFSLGQALGGHMRRHRIGVNEELSLMKEIKSVGEVPILKRSNSKRVMCLDLNLTPLQNDLKLLFGNMAPKVDSFV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01178 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Vifa3g01178 168 SMART c2h2final6 86 108 IPR013087 -
Vifa3g01178 168 SMART c2h2final6 38 60 IPR013087 -
Vifa3g01178 168 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Vifa3g01178 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Vifa3g01178 168 Pfam C2H2-type zinc finger 86 109 - -
Vifa3g01178 168 Pfam C2H2-type zinc finger 38 62 - -
Vifa3g01178 168 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Vifa3g01178 168 PANTHER ZINC FINGER PROTEIN ZAT5 6 152 - -
Vifa3g01178 168 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Vifa3g01178 168 Gene3D Classic Zinc Finger 36 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01178 Vifa-Chr3 304838608 304839114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01178 1 165 C2H2 Transcription Factor Family AT2G37430 46.328 5.74e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01178 zf-C2H2_6 2.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01178 - - aprc:113870747 233.032