Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01175 ATGTCGTTTGACAATCAACTATTTTGGATGGGGAAGAGTTATGGGAATTTGAATGACAGTGATGACATGACATATGATAATTCTAGAGTCGAGTCAAAGCGATCTAATCAGTGGTTTGTGGATGGCCCTGAAATGGAACTGTCTCCCAATAAGAAACAAGCAGTAGAGGGTCCAAACAGTTTATCGCCTGGGTTGCTCAACTCCAATATTTCGTCATGGGGAGATTCTTTAAGTTTTCCCTCTTTAATTGGCCATTTTACTGCACAACAATTTGATCCAGTGGCTGCATCTATGATTTTTGAAGATGCAAGCATTTTCCCTTTAAACATAGATGATAAGTTGAGTGCAGAAAGAAAGGATATCTTGGATCCTTTTGGGGGTGATGCCTTGTTTGGTTTATCCTTGTCAACTACATTAGAAGACTCTCAACCAGTTTATAATTACGGTGGGATTAGAAAAGTCAAAGTTAATGAGGTGAAGGAGTCTAGAAATTTCATGTTTGTTCCGACTAATAATCCCTGTGATGGAGGAGTTAGCAACACTGTGTCACATTCTCATGCATCCAAGGAAGCTGATAATTCAATATCAACAGGCCTAACATACAACAAAGGGGATGCCAATGTAATATTGGTCGACGGTGATTTTGACAGGATGGATAATAATTTAATATCAATGAGTCAATCTTATACCAAGGGAGATGAGAACTTATCAATACCACCGACATACAAAGAGATTTGCAATACAATATCAATGGATCAAGGATACAGTAATATAGATAGTGATGCGATGTCTATTGATCAATCTTACCACAAGGCCCGTGGTAATTCTATGTTGAGTAACCACTTATTCAATAACGTTGAAGATGGCACCATATTGATGGGCCAGACTTACCATCAGAGGGGAAATGACATGTCATTTGTTTCTCATTCTTATAATAAAGGAGAAAGCACTATCATATCCTTTGGTGGCTGTGACGATGATGATGCAACTCTATCTGACTCACGTGTTTCTGATTACGTGCGGTTTATGGGTCAAACACCTTCACGTATGTCACAAGTTGCAAATGAAAAAGAGTTGGTTAGATCAAGCTCTAAACTAATTCCAAGTACAACCCAGATGTCTGCATCTGAAGCTGAAAATGTTCCCAAGACAAAAGAGGAGATGAAACTGTCTAAAAAAGCTACTTCAAATAACTTCCCTTCGAATGTCAGAAGTTTGCTATCCACTGGCATGCTGGATGGCGTCTCTGTAAAGTATAAAGCATGGTCGCGGGAGAAGGAACTTCGAGCTGTTATAAAAGGTGCTGGGTATTTATGCAGCTGTCCGTCGTGTAATTTTTCTAAGGTTATTAATGCATACGAGTTTGAGCGGCATGCTGGTTGCAAGACAAAGCACCCAAATAATCATATTTACTTTGAGAATGGGAAAACCATATATGGAGTGGTACAAGAGCTCAGGAGCACTCCACAGAATATGTTATTTGAAGTTATTCAGACAATAACTGGTTCACCTATCCATCAGAAATCCTTCCGGATTTGGAAAGAATCCTTTTTGGCTGCAGCACGCGAGCTCCAGCGCATATGTGGAAAAGATTAA 1596 0.3947 MSFDNQLFWMGKSYGNLNDSDDMTYDNSRVESKRSNQWFVDGPEMELSPNKKQAVEGPNSLSPGLLNSNISSWGDSLSFPSLIGHFTAQQFDPVAASMIFEDASIFPLNIDDKLSAERKDILDPFGGDALFGLSLSTTLEDSQPVYNYGGIRKVKVNEVKESRNFMFVPTNNPCDGGVSNTVSHSHASKEADNSISTGLTYNKGDANVILVDGDFDRMDNNLISMSQSYTKGDENLSIPPTYKEICNTISMDQGYSNIDSDAMSIDQSYHKARGNSMLSNHLFNNVEDGTILMGQTYHQRGNDMSFVSHSYNKGESTIISFGGCDDDDATLSDSRVSDYVRFMGQTPSRMSQVANEKELVRSSSKLIPSTTQMSASEAENVPKTKEEMKLSKKATSNNFPSNVRSLLSTGMLDGVSVKYKAWSREKELRAVIKGAGYLCSCPSCNFSKVINAYEFERHAGCKTKHPNNHIYFENGKTIYGVVQELRSTPQNMLFEVIQTITGSPIHQKSFRIWKESFLAAARELQRICGKD 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01175 531 MobiDBLite consensus disorder prediction 362 379 - -
Vifa3g01175 531 Pfam Tify domain binding domain 431 485 IPR032308 -
Vifa3g01175 531 MobiDBLite consensus disorder prediction 362 384 - -
Vifa3g01175 531 PANTHER AUTOIMMUNE REGULATOR 9 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01175 Vifa-Chr3 303380964 303383784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01175 380 517 PHD Transcription Factor Family AT3G53680 54.348 8.11e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01175 - - mtr:25484103 834.328