Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01172 ATGACACATAATAGTATTCAAAGTAGCAGCATAGACTCTTGTCTTGAACTTACTCACTTTGCTCCTACCAATCCACTTAATGATATCTTGCTGATTTGTGGCTTCCAGATTCCAATTAATCTCGAAAAGTTTCCAACCTTGCTTTCGATAGCACAAGTGTTGACAGTGATATCGCAGCAGCAGAAAGCGGCTCTTAGAGAGGTTTACAAGAATAAGAAGTATTTGCCACTTGATCTTCGTACCAAGAAACCCGTGCCATTCGAAGACGCCTTACCAAACATCAGGCATCGTTGA 294 0.4116 MTHNSIQSSSIDSCLELTHFAPTNPLNDILLICGFQIPINLEKFPTLLSIAQVLTVISQQQKAALREVYKNKKYLPLDLRTKKPVPFEDALPNIRHR 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01172 97 Gene3D - 39 73 IPR036049 GO:0003735|GO:0005840|GO:0006412
Vifa3g01172 97 PANTHER 60S RIBOSOMAL PROTEIN L35 48 84 IPR045059 GO:0000463|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01172 Vifa-Chr3 302872440 302874747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01172 3 83 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 48.780 7.40e-15 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01172 K02918 - rvl:131314800 68.1662