Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01168 ATGGGTAACGCGCACCGACATCACCCCAAACACCGTTTTCCCCTCCCTCACAACACGGTTCCTACTCCTCCATATAAATGCCCTACCTCTCATCCTCCTCATAATCTACCAAACCAAAACCAAGGTGGTTCCTATTCCAACACCAACATGATCTCTTTACCTTACGCCAACGCCGACGCCACTCTCCGTTCTCTCGCCGCTCAAGCTGAAGGCTACGGCCGCTTCGCTATCGGCGGACTCCATGGTTCTCTTTATCATGTTACATCACTCTTAGATGATGGACCGGGATCATTGCGTGAGGCTTGTCGTCGAAAGGAACCTTTGTGGATTGTGTTTGAGGTTTCGGGTACAATTCATCTTTTGTCTTATTTGAGTGTGTCGTCTTACAAGACGGTTGATGGGAGGGGGCAAAGGATTAAGCTGGCTGGAAAGGGTTTTAAGCTGAAGCAATGTGAACATGTGATCATTTGTAATTTGGAGGTTCAAGGAGGTAGAGGACATGATGTTGATGCTATTCAGATCAAACCTAATTCTAAACATATATGGATTGATCGTTGCTCTTTGAGTGATTGTGAAGACGGCCTCATAGATATCACTCGAGGAAGCACTGAAATTACTATTTCAAGGTGTCATTTTCATAATCATGACAAAACAATACTCATTGGATCAGATCCCTCACATGTTGATGATAGATGCATAAAGGTCACCATACACCACTGTTTTTTCAACGGTACTCGACAGAGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAATTACAGCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCTCAACATAATATCTATGAAGCTGGCCAGAAGAAGATTGCTTTTAAGTATCTTCATGAGAAGGCAGCAGACAAGGAATGTGAAGCAACTGGTCACATAATCTCTGAAGGAGACTTATTTTTAAATGGTGCTCAACCAGGGTTGATGACAGAGAATGTTGGGGTTAAAGTGTTTCATCCGAGTGAACACTATCTCACATGGACGGTGGAACCTCCAACAGAAGATCTAAAGCAAGTTCTTCAACACTGCACTGGATGGCAATCTGTTGCGCGGCCAGCGGATCAAACCGTTCGTGCAGAATAG 1146 0.4424 MGNAHRHHPKHRFPLPHNTVPTPPYKCPTSHPPHNLPNQNQGGSYSNTNMISLPYANADATLRSLAAQAEGYGRFAIGGLHGSLYHVTSLLDDGPGSLREACRRKEPLWIVFEVSGTIHLLSYLSVSSYKTVDGRGQRIKLAGKGFKLKQCEHVIICNLEVQGGRGHDVDAIQIKPNSKHIWIDRCSLSDCEDGLIDITRGSTEITISRCHFHNHDKTILIGSDPSHVDDRCIKVTIHHCFFNGTRQRHPRVRFAKVHLYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKIAFKYLHEKAADKECEATGHIISEGDLFLNGAQPGLMTENVGVKVFHPSEHYLTWTVEPPTEDLKQVLQHCTGWQSVARPADQTVRAE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01168 381 SMART amb_all 115 293 IPR002022 -
Vifa3g01168 381 SUPERFAMILY Pectin lyase-like 68 372 IPR011050 -
Vifa3g01168 381 Pfam Pectate lyase 124 286 IPR002022 -
Vifa3g01168 381 MobiDBLite consensus disorder prediction 1 45 - -
Vifa3g01168 381 Gene3D - 54 354 IPR012334 -
Vifa3g01168 381 PANTHER PECTATE LYASE 18-RELATED 55 326 IPR045032 GO:0030570
Vifa3g01168 381 PRINTS Pollen allergen Amb family signature 68 85 IPR018082 -
Vifa3g01168 381 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Vifa3g01168 381 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Vifa3g01168 381 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01168 Vifa-Chr3 302541324 302543120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01168 90 378 Polysaccharide Lyase AT3G55140 75.779 3.50e-167 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01168 K01728 - gmx:100814368 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01168 3 302541324 302543120 Vifa3g01168 3 302541324 302543120 ECH