Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01156 ATGGCCATGGAAGAAACAACATCAACCATCATGGCAGCACTTTCATCTCTCCCTTCTCACCACCTCACAAATCTCACTAACACCATTTTCTCCTCCACCCGCCGCCACTACCACCGCCTCACTCTCCTCCTCTCTTCCCCATCTCTCTTCTCCTTAACACTTCGTCACCTCCACACTCTCTCTCTCCCCCAAAAAACTCTACTCATTTCACGACACCTCCTTTCGTCTCTCCACCTTCTCACCCAATCAAAAACCTCCACGTCACCTCTCCCACCTCCCGCTTCAACCTCCATGAGAGACCGTGAAACCGACGCGGTCTTGCTTCTTCTCTTGCTATGCGAAACACATAAACACAATCCAGAAGCTCTAAACGCACCCTTTCATGATTGGAGATTGAATTTAAGCAAACATTTCTCCGATACATTTTTGACGCTTTCTTATTCTTCCGCGCCGCCGCTTGGAGCTTGTTTAGGATCTGTTTTGATTCCGTTTATCGAAACAGTGAGTCGGTGTTGGATATTGGTGGATGTTTTAGCCTCCGACGGTGGTGGTGATGGTGGAAAGGGAGTGAAGGAAGTGGCGGCTTCGGCGGCGACGGTGGTTTCTCTGCCGGCGGTTAGAGTGTGTGTTGGCGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATTTTGCCTTGGTTGGGAAAGAGGAACACGTGTCCTTGTTGCAGGTTTCGGTTACCGTCCGATGATGTTTTTGGAGAGATCCAACGGCTGTGGGAAGTCTTAGTTAAAATTGGTGCTAAACAGTAA 849 0.4912 MAMEETTSTIMAALSSLPSHHLTNLTNTIFSSTRRHYHRLTLLLSSPSLFSLTLRHLHTLSLPQKTLLISRHLLSSLHLLTQSKTSTSPLPPPASTSMRDRETDAVLLLLLLCETHKHNPEALNAPFHDWRLNLSKHFSDTFLTLSYSSAPPLGACLGSVLIPFIETVSRCWILVDVLASDGGGDGGKGVKEVAASAATVVSLPAVRVCVGGRECVICKDEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKIGAKQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01156 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 107 260 - -
Vifa3g01156 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 267 IPR013083 -
Vifa3g01156 282 SUPERFAMILY RING/U-box 212 261 - -
Vifa3g01156 282 CDD RING-H2_PA-TM-RING 214 256 - -
Vifa3g01156 282 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Vifa3g01156 282 SMART ring_2 215 255 IPR001841 -
Vifa3g01156 282 Pfam Ring finger domain 214 256 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01156 Vifa-Chr3 300240233 300241081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01156 4 277 C3H Transcription Factor Family AT5G02750 50.000 2.68e-77 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01156 - - cam:101509295 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01156 3 300240233 300241081 Vifa3g01156 3 300240233 300241081 ECH