Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g01156 | ATGGCCATGGAAGAAACAACATCAACCATCATGGCAGCACTTTCATCTCTCCCTTCTCACCACCTCACAAATCTCACTAACACCATTTTCTCCTCCACCCGCCGCCACTACCACCGCCTCACTCTCCTCCTCTCTTCCCCATCTCTCTTCTCCTTAACACTTCGTCACCTCCACACTCTCTCTCTCCCCCAAAAAACTCTACTCATTTCACGACACCTCCTTTCGTCTCTCCACCTTCTCACCCAATCAAAAACCTCCACGTCACCTCTCCCACCTCCCGCTTCAACCTCCATGAGAGACCGTGAAACCGACGCGGTCTTGCTTCTTCTCTTGCTATGCGAAACACATAAACACAATCCAGAAGCTCTAAACGCACCCTTTCATGATTGGAGATTGAATTTAAGCAAACATTTCTCCGATACATTTTTGACGCTTTCTTATTCTTCCGCGCCGCCGCTTGGAGCTTGTTTAGGATCTGTTTTGATTCCGTTTATCGAAACAGTGAGTCGGTGTTGGATATTGGTGGATGTTTTAGCCTCCGACGGTGGTGGTGATGGTGGAAAGGGAGTGAAGGAAGTGGCGGCTTCGGCGGCGACGGTGGTTTCTCTGCCGGCGGTTAGAGTGTGTGTTGGCGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATTTTGCCTTGGTTGGGAAAGAGGAACACGTGTCCTTGTTGCAGGTTTCGGTTACCGTCCGATGATGTTTTTGGAGAGATCCAACGGCTGTGGGAAGTCTTAGTTAAAATTGGTGCTAAACAGTAA | 849 | 0.4912 | MAMEETTSTIMAALSSLPSHHLTNLTNTIFSSTRRHYHRLTLLLSSPSLFSLTLRHLHTLSLPQKTLLISRHLLSSLHLLTQSKTSTSPLPPPASTSMRDRETDAVLLLLLLCETHKHNPEALNAPFHDWRLNLSKHFSDTFLTLSYSSAPPLGACLGSVLIPFIETVSRCWILVDVLASDGGGDGGKGVKEVAASAATVVSLPAVRVCVGGRECVICKDEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKIGAKQ | 282 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g01156 | 282 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 107 | 260 | - | - | |
Vifa3g01156 | 282 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 267 | IPR013083 | - | |
Vifa3g01156 | 282 | SUPERFAMILY | RING/U-box | 212 | 261 | - | - | |
Vifa3g01156 | 282 | CDD | RING-H2_PA-TM-RING | 214 | 256 | - | - | |
Vifa3g01156 | 282 | ProSiteProfiles | Zinc finger RING-type profile. | 215 | 256 | IPR001841 | - | |
Vifa3g01156 | 282 | SMART | ring_2 | 215 | 255 | IPR001841 | - | |
Vifa3g01156 | 282 | Pfam | Ring finger domain | 214 | 256 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g01156 | Vifa-Chr3 | 300240233 | 300241081 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g01156 | 4 | 277 | C3H Transcription Factor Family | AT5G02750 | 50.000 | 2.68e-77 | 234 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa3g01156 | - | - | cam:101509295 | 400.979 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa3g01156 | 3 | 300240233 | 300241081 | Vifa3g01156 | 3 | 300240233 | 300241081 | ECH |