Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01153 ATGGTGAGATCTTGCTGGAAACCTGCTGTGGAGGGTGATGATGGAGATGGGAGTGGAAGTGGGAGTGGTGGGAGAGTTGATGGATTGTTATGGTACAAAGATTTAGGGAACCATGTTTATGGTGAATTTTCAATGGCTGTAATTCAAGCTAATACTTCTTTGGAAGATAGAAGTGAATTTGAGTCTGGTCCTTTGACTTTTAACCATTTTGGTCCTCAAGGAACTTTTATTGGTGTTTATGATGGCCATGGTGGAGCTGAGGCTTCTCAATTTGTCACTGATAATCTTTTCTGCAACCTCAAAAGGCTTGCAGCTGAAAACCAAGGCTTATCAGAAAATGTTATCAAAAGGGCATTTTCAGCAACAGAAGAAAGTTTTTTATCACTTGTGAAGAAACAGTGGCTAAGTAAGCCACATATTGCATCAGCAGGTACATGTTGTTTGGTTGGGATAATTTGCAATGGAATGATATATATTGCAAATTCCGGTGACTCAAGGGCGGTGTTAGGAAGATTAGAGAGAGCAAGAAGGGAAATATCAGCTATACAATTATCTACAGAACATAATGTTAATCTTGAAAGAGTTAGAGATGAACTTAGATTAAAGCATCCTTTTGATTCAGAAATTGTGGTTCTGAGACACAATGTTTGGCGCGTGAAAGGCCTCATTCAGGTTTCGCGATCGATCGGCGATGCGTACTTGAAGAAAGCTGAATTTAACAGGGAGCCTCTACCATCTAAGTTTAGACTAGCTGAAACATTTTTCAAGCCAATTCTGAGTTGCGAGCCATCAATTTCTTCTCACAAACTTCATCCTGATGACCAGTTTCTCATATTTGCTTCGGATGGATTATGGGAGCATCTTAGCAACCAAGAGGCTGTTCATATAGTCAGCAATAATGCACCTAATGGAATTGCAAGAAGACTCGTGAAGGCAGCATTAAGAGAAGCAGCTAAGAAGAGAGAGATGAGACTAGCAGACCTACAAAAGATTGAACAAGGAACAAGGAGACATTTTCATGATGATATAACAGTGATTGTTGTGTTTATAAATCACAAAATGATTGATAATAGTTCTCTTTGGGGCTCTCCTCTTTCAATCAAGGGAGGTGGATCTGCTAATCATTAA 1128 0.3954 MVRSCWKPAVEGDDGDGSGSGSGGRVDGLLWYKDLGNHVYGEFSMAVIQANTSLEDRSEFESGPLTFNHFGPQGTFIGVYDGHGGAEASQFVTDNLFCNLKRLAAENQGLSENVIKRAFSATEESFLSLVKKQWLSKPHIASAGTCCLVGIICNGMIYIANSGDSRAVLGRLERARREISAIQLSTEHNVNLERVRDELRLKHPFDSEIVVLRHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLPSKFRLAETFFKPILSCEPSISSHKLHPDDQFLIFASDGLWEHLSNQEAVHIVSNNAPNGIARRLVKAALREAAKKREMRLADLQKIEQGTRRHFHDDITVIVVFINHKMIDNSSLWGSPLSIKGGGSANH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01153 375 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g01153 375 Pfam Protein phosphatase 2C 75 319 IPR001932 -
Vifa3g01153 375 Gene3D - 33 359 IPR036457 -
Vifa3g01153 375 PANTHER PROTEIN PHOSPHATASE 31 348 IPR015655 GO:0004722|GO:0006470
Vifa3g01153 375 SUPERFAMILY PP2C-like 65 351 IPR036457 -
Vifa3g01153 375 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vifa3g01153 375 CDD PP2Cc 40 350 IPR001932 -
Vifa3g01153 375 ProSiteProfiles PPM-type phosphatase domain profile. 39 350 IPR001932 -
Vifa3g01153 375 SMART PP2C_4 36 348 IPR001932 -
Vifa3g01153 375 FunFam Phosphatase 2C family protein 31 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01153 Vifa-Chr3 298930090 298932064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01153 1 371 PP2C-type Phosphatase Gene Family AT3G12620 65.860 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01153 K01102 - gmx:100814123 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01153 3 298930090 298932064 Vifa3g01153 3 298930090 298932064 ECH