Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01144 ATGGGTTGGATTCCATGTTCTGGAAGTTCCAACACTAAGAAGAAGATAAAGAAGAAATTGGAGGAGGTTGAAGTTATGCGTGATGCGATCAAAGCCAACCCAGGGAATTTAAAGAAGAATTCATCTGTGAATTCCAGAAGTTCCTCTAAAAATGGAGACTCTGAACACATTGCCGCACAGACGTTCCCTTTCCGTGAGTTAGCAGCTGCTACTAGAAACTTTAGAGCAGAATGTCTTCTGGGCGAGGGAGGCTTTGGCAGAGTGTACAAAGGGCATTTGGAATCTGTTAATCAGACGGTTGCAATTAAGCAACTTGACCGAAATGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTTAACCTAATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTACATGATGTTTCTCTTGGCAAGAAACGGCTTGACTGGAGCACGAGAATGAAAATAGCTGCCGGGGCAGCAAAAGGGTTGGAATATCTACATGATAAAGCTAACCCTCCCGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCTAAGTTATCCGATTTCGGTTTGGCTAAAGTTGGTCCCGTCGGGGAAAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTACGCAATGACGGGTCAACTCACTCTGAAATCAGATGTTTATAGTTTTGGTGTCGTTCTTCTAGAAATAATTACCGGAAGGAAAGCGATTGACAATTCAAAATGTGCGGCAGAGCAGAATCTTGTAGCATGGGCTAGACCTTTGTTTAAAGATCGAAGAAAATTCACGCAAATGGCCGATCCAATGCTCCAAGGTCAGTATCCTTCAAGAGGGATATATCAAGCCCTTGCTGTCGCAGCAATGTGTGTTCAGGAGCAGGCGAATATGCGTCCAGTTATAGCCGATGTTGTGACAGCTTTGAGCTACCTAGCTTCCCAAAAATTTGAGCCAAATACGCAGACGGTACAAAGCTCTCGCCTCGGTTGTGGTACTCCTCCTCGAAGCAGGAGGGGAGTTTGA 1143 0.4409 MGWIPCSGSSNTKKKIKKKLEEVEVMRDAIKANPGNLKKNSSVNSRSSSKNGDSEHIAAQTFPFRELAAATRNFRAECLLGEGGFGRVYKGHLESVNQTVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDVSLGKKRLDWSTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKCAAEQNLVAWARPLFKDRRKFTQMADPMLQGQYPSRGIYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKFEPNTQTVQSSRLGCGTPPRSRRGV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01144 380 SUPERFAMILY Protein kinase-like (PK-like) 57 346 IPR011009 -
Vifa3g01144 380 Coils Coil 13 33 - -
Vifa3g01144 380 MobiDBLite consensus disorder prediction 35 55 - -
Vifa3g01144 380 MobiDBLite consensus disorder prediction 34 55 - -
Vifa3g01144 380 FunFam Serine/threonine-protein kinase PBS1 46 150 - -
Vifa3g01144 380 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01144 380 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Vifa3g01144 380 FunFam Serine/threonine-protein kinase PBS1 151 366 - -
Vifa3g01144 380 PANTHER OS07G0668900 PROTEIN 21 360 - -
Vifa3g01144 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vifa3g01144 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Vifa3g01144 380 SMART serkin_6 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01144 380 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Vifa3g01144 380 CDD STKc_IRAK 80 348 - -
Vifa3g01144 380 Pfam Protein tyrosine and serine/threonine kinase 78 347 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01144 Vifa-Chr3 297879457 297882385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01144 27 353 Glycoside Hydrolase AT3G07070 66.667 1.95e-162 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa3g01144 PK_Tyr_Ser-Thr 9.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01144 - - gmx:100776041 669.463