Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01143 ATGACAAGGGGTAACCAGATATGTGTTGATGGTGACAGTAAAGAACTTACTCAGTGTTTGCGGGATGGGAAGAACTCCTTAAAAAAAGGAGTTGCTGGTGAGCGCGATGAAGTGAAATGTGATGGAGTAGCTGAAGAAGTTAAGGTTGGAGAGGGAGGGAATGGGGAATCCTCTTCTGTCCAGCAGCAAGTACCGCAGTATCAGTCTCAAGGGGCAATTATTTGTTGGGAGAAGTTCTTACATATTAGATCCCTTAAAGTCTTGCTTGTGGAGTATGATGACTGTACTCGCCATATTGTCACTGCATTGCTTCGCAATTGCAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATATTATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGCTCTTCTATACAAGATTATGGGCCACACAACACGGAAAAATGTTCCAGTGATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGCCGATTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAATCTGTGAAATCAAAGAGTCTTGAGAAGTTTGATAACAATTCGGGAAGCAATGACGAGCAAGATAATGGAAGTTTAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCTAAATCAGGCTCTCAGTGGGATCAGATAGCTGAGTGTCCCGACAGCACTTGTGCTCAAGTTGCTCATTCCAATGCTGAAATATGCAGGGGCAAGATGGTTCCTCCGGTCATAAAGGAGAGTCCAGAGCAAAAGGAACAAATAGGTTCAAAACATATCAACACATTTGATGTAGGCACCTCTAAATTCAATGAGCAAATTAATAGAGGAAACCTGGAGCTTAATTGTGAGAATCAATCTGGCAAGCTAAGATGCAAAGGGCTTTCATTATCTGATGGTGTTACTAGCACTTCTGATTCTCGAATGCGAAGTGGAGAAATTGAAGCTCTAAATAGAATACCCAGGTCATCAGATATTTGCAACAAAGGTACTGATAATGACGAGGAGTTTCCATCTCTTGAGCTCAGTTTAAAGAGGCCCAGAGAAGTTAAAGAAGCTGGTACTACAAGTCAGGATGAACGGAATGTTTTAAGACATTCTGATCTGTCTGCTTTCTCAAAGTACAATGCAGCCCTTAATGCTAAGAAGTCTCCTACCAGATGTGTTGGAAGTAACTCTCCACATAATAACAGCTTAGAAGTTACAAAGAAAGATTCCTCTCTTGATGTTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCGAATGGTGGTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTTTACCAAGTTTGCTGTTATAAGTGAGCCAGCAGTGGCATCAACAACAAAATTTGTGTACAAAACATCTGCTTTCCAGCCCGTAAAGAGCAGCCTCTTGCGTACCTCTCAACAGGATTTTCATTACCATTATGCAAACCACAACAATGTTGCTAACATGCAGCCTCAGTTGCCGCCTGAGAACGATGCCGAATCTTTAAAGAAAATGACTTCTGCTGCTCCGTACTGCGGCGGCTCATCAAATGCGGTTGAAGTGCAAGTTGAAGGTAATATGGGAAATTACAGTATCAATAAAAGTGCTTCAGGCAGCAACATTGAAAGCAATGGACAAAATGGGAGCAGCACTGCAATTAATGCTGGAGGGACAAACATAGAAAGCAACAATGGACTTGTTGGGAATAGTGGTAGTGGTGATGCTAGTGGAATTGGAAGTGCAAACAGAGTAGATCGAAACAAGAATTCTCAAAGGGAAGCAGCCCTAACTAAATTTCGCCAAAAAAGAAAGGAGAGAAAGGATAAGTGCTTTCATAAACAGGTACGATATCAGAGCAGGAAGAAATTAGCTGAACAGCGACCACGCTACCGAGGACAATTTGTGCGACAGTCTTCAGACAATAATGCAAGTGAGGCAACAGATAGTTAA 2163 0.4189 MTRGNQICVDGDSKELTQCLRDGKNSLKKGVAGERDEVKCDGVAEEVKVGEGGNGESSSVQQQVPQYQSQGAIICWEKFLHIRSLKVLLVEYDDCTRHIVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDIILTEVAMPGLSGIALLYKIMGHTTRKNVPVIMMSSHDSMGLVFKCLSKGAADFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNDEQDNGSLGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSGSQWDQIAECPDSTCAQVAHSNAEICRGKMVPPVIKESPEQKEQIGSKHINTFDVGTSKFNEQINRGNLELNCENQSGKLRCKGLSLSDGVTSTSDSRMRSGEIEALNRIPRSSDICNKGTDNDEEFPSLELSLKRPREVKEAGTTSQDERNVLRHSDLSAFSKYNAALNAKKSPTRCVGSNSPHNNSLEVTKKDSSLDVQSHSSGNPPNQNSNGGSNNIDMGSTTNNAFTKFAVISEPAVASTTKFVYKTSAFQPVKSSLLRTSQQDFHYHYANHNNVANMQPQLPPENDAESLKKMTSAAPYCGGSSNAVEVQVEGNMGNYSINKSASGSNIESNGQNGSSTAINAGGTNIESNNGLVGNSGSGDASGIGSANRVDRNKNSQREAALTKFRQKRKERKDKCFHKQVRYQSRKKLAEQRPRYRGQFVRQSSDNNASEATDS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01143 720 PANTHER TWO-COMPONENT RESPONSE REGULATOR 85 385 IPR045279 GO:0009736
Vifa3g01143 720 MobiDBLite consensus disorder prediction 413 433 - -
Vifa3g01143 720 Pfam Response regulator receiver domain 87 198 IPR001789 GO:0000160
Vifa3g01143 720 MobiDBLite consensus disorder prediction 239 271 - -
Vifa3g01143 720 MobiDBLite consensus disorder prediction 451 501 - -
Vifa3g01143 720 MobiDBLite consensus disorder prediction 703 720 - -
Vifa3g01143 720 MobiDBLite consensus disorder prediction 657 672 - -
Vifa3g01143 720 Pfam CCT motif 663 708 IPR010402 GO:0005515
Vifa3g01143 720 ProSiteProfiles CCT domain profile. 666 708 IPR010402 GO:0005515
Vifa3g01143 720 Gene3D - 84 244 - -
Vifa3g01143 720 SMART REC_2 85 200 IPR001789 GO:0000160
Vifa3g01143 720 ProSiteProfiles Response regulatory domain profile. 86 204 IPR001789 GO:0000160
Vifa3g01143 720 MobiDBLite consensus disorder prediction 673 688 - -
Vifa3g01143 720 MobiDBLite consensus disorder prediction 209 226 - -
Vifa3g01143 720 MobiDBLite consensus disorder prediction 209 283 - -
Vifa3g01143 720 FunFam Two-component response regulator-like PRR37 85 243 - -
Vifa3g01143 720 CDD psREC_PRR 87 190 - -
Vifa3g01143 720 SUPERFAMILY CheY-like 83 209 IPR011006 -
Vifa3g01143 720 MobiDBLite consensus disorder prediction 634 720 - -
Vifa3g01143 720 MobiDBLite consensus disorder prediction 634 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01143 Vifa-Chr3 297593360 297613326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01143 163 720 Response Regulator Gene Family AT5G02810 47.049 8.28e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vifa3g01143 Response_reg 9.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01143 K12129 - gmx:100796933 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01143 3 297593360 297613326 Vifa3g01143 3 297593360 297613326 ECH