Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g01143 | ATGACAAGGGGTAACCAGATATGTGTTGATGGTGACAGTAAAGAACTTACTCAGTGTTTGCGGGATGGGAAGAACTCCTTAAAAAAAGGAGTTGCTGGTGAGCGCGATGAAGTGAAATGTGATGGAGTAGCTGAAGAAGTTAAGGTTGGAGAGGGAGGGAATGGGGAATCCTCTTCTGTCCAGCAGCAAGTACCGCAGTATCAGTCTCAAGGGGCAATTATTTGTTGGGAGAAGTTCTTACATATTAGATCCCTTAAAGTCTTGCTTGTGGAGTATGATGACTGTACTCGCCATATTGTCACTGCATTGCTTCGCAATTGCAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATATTATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGCTCTTCTATACAAGATTATGGGCCACACAACACGGAAAAATGTTCCAGTGATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGCCGATTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAATCTGTGAAATCAAAGAGTCTTGAGAAGTTTGATAACAATTCGGGAAGCAATGACGAGCAAGATAATGGAAGTTTAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCTAAATCAGGCTCTCAGTGGGATCAGATAGCTGAGTGTCCCGACAGCACTTGTGCTCAAGTTGCTCATTCCAATGCTGAAATATGCAGGGGCAAGATGGTTCCTCCGGTCATAAAGGAGAGTCCAGAGCAAAAGGAACAAATAGGTTCAAAACATATCAACACATTTGATGTAGGCACCTCTAAATTCAATGAGCAAATTAATAGAGGAAACCTGGAGCTTAATTGTGAGAATCAATCTGGCAAGCTAAGATGCAAAGGGCTTTCATTATCTGATGGTGTTACTAGCACTTCTGATTCTCGAATGCGAAGTGGAGAAATTGAAGCTCTAAATAGAATACCCAGGTCATCAGATATTTGCAACAAAGGTACTGATAATGACGAGGAGTTTCCATCTCTTGAGCTCAGTTTAAAGAGGCCCAGAGAAGTTAAAGAAGCTGGTACTACAAGTCAGGATGAACGGAATGTTTTAAGACATTCTGATCTGTCTGCTTTCTCAAAGTACAATGCAGCCCTTAATGCTAAGAAGTCTCCTACCAGATGTGTTGGAAGTAACTCTCCACATAATAACAGCTTAGAAGTTACAAAGAAAGATTCCTCTCTTGATGTTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCGAATGGTGGTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTTTACCAAGTTTGCTGTTATAAGTGAGCCAGCAGTGGCATCAACAACAAAATTTGTGTACAAAACATCTGCTTTCCAGCCCGTAAAGAGCAGCCTCTTGCGTACCTCTCAACAGGATTTTCATTACCATTATGCAAACCACAACAATGTTGCTAACATGCAGCCTCAGTTGCCGCCTGAGAACGATGCCGAATCTTTAAAGAAAATGACTTCTGCTGCTCCGTACTGCGGCGGCTCATCAAATGCGGTTGAAGTGCAAGTTGAAGGTAATATGGGAAATTACAGTATCAATAAAAGTGCTTCAGGCAGCAACATTGAAAGCAATGGACAAAATGGGAGCAGCACTGCAATTAATGCTGGAGGGACAAACATAGAAAGCAACAATGGACTTGTTGGGAATAGTGGTAGTGGTGATGCTAGTGGAATTGGAAGTGCAAACAGAGTAGATCGAAACAAGAATTCTCAAAGGGAAGCAGCCCTAACTAAATTTCGCCAAAAAAGAAAGGAGAGAAAGGATAAGTGCTTTCATAAACAGGTACGATATCAGAGCAGGAAGAAATTAGCTGAACAGCGACCACGCTACCGAGGACAATTTGTGCGACAGTCTTCAGACAATAATGCAAGTGAGGCAACAGATAGTTAA | 2163 | 0.4189 | MTRGNQICVDGDSKELTQCLRDGKNSLKKGVAGERDEVKCDGVAEEVKVGEGGNGESSSVQQQVPQYQSQGAIICWEKFLHIRSLKVLLVEYDDCTRHIVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDIILTEVAMPGLSGIALLYKIMGHTTRKNVPVIMMSSHDSMGLVFKCLSKGAADFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNDEQDNGSLGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSGSQWDQIAECPDSTCAQVAHSNAEICRGKMVPPVIKESPEQKEQIGSKHINTFDVGTSKFNEQINRGNLELNCENQSGKLRCKGLSLSDGVTSTSDSRMRSGEIEALNRIPRSSDICNKGTDNDEEFPSLELSLKRPREVKEAGTTSQDERNVLRHSDLSAFSKYNAALNAKKSPTRCVGSNSPHNNSLEVTKKDSSLDVQSHSSGNPPNQNSNGGSNNIDMGSTTNNAFTKFAVISEPAVASTTKFVYKTSAFQPVKSSLLRTSQQDFHYHYANHNNVANMQPQLPPENDAESLKKMTSAAPYCGGSSNAVEVQVEGNMGNYSINKSASGSNIESNGQNGSSTAINAGGTNIESNNGLVGNSGSGDASGIGSANRVDRNKNSQREAALTKFRQKRKERKDKCFHKQVRYQSRKKLAEQRPRYRGQFVRQSSDNNASEATDS | 720 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g01143 | 720 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 85 | 385 | IPR045279 | GO:0009736 | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 413 | 433 | - | - | |
Vifa3g01143 | 720 | Pfam | Response regulator receiver domain | 87 | 198 | IPR001789 | GO:0000160 | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 239 | 271 | - | - | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 451 | 501 | - | - | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 703 | 720 | - | - | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 657 | 672 | - | - | |
Vifa3g01143 | 720 | Pfam | CCT motif | 663 | 708 | IPR010402 | GO:0005515 | |
Vifa3g01143 | 720 | ProSiteProfiles | CCT domain profile. | 666 | 708 | IPR010402 | GO:0005515 | |
Vifa3g01143 | 720 | Gene3D | - | 84 | 244 | - | - | |
Vifa3g01143 | 720 | SMART | REC_2 | 85 | 200 | IPR001789 | GO:0000160 | |
Vifa3g01143 | 720 | ProSiteProfiles | Response regulatory domain profile. | 86 | 204 | IPR001789 | GO:0000160 | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 673 | 688 | - | - | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 209 | 226 | - | - | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 209 | 283 | - | - | |
Vifa3g01143 | 720 | FunFam | Two-component response regulator-like PRR37 | 85 | 243 | - | - | |
Vifa3g01143 | 720 | CDD | psREC_PRR | 87 | 190 | - | - | |
Vifa3g01143 | 720 | SUPERFAMILY | CheY-like | 83 | 209 | IPR011006 | - | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 634 | 720 | - | - | |
Vifa3g01143 | 720 | MobiDBLite | consensus disorder prediction | 634 | 656 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g01143 | Vifa-Chr3 | 297593360 | 297613326 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g01143 | 163 | 720 | Response Regulator Gene Family | AT5G02810 | 47.049 | 8.28e-113 | 351 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Pseudo ARR-B | Vifa3g01143 | Response_reg | 9.5e-21 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa3g01143 | K12129 | - | gmx:100796933 | 1021.15 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa3g01143 | 3 | 297593360 | 297613326 | Vifa3g01143 | 3 | 297593360 | 297613326 | ECH |