Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01142 ATGACAAGGGGTAACCAGATATGTGTTGATGGTGACAGTAAAGAACTTACTCAGTGTTTGCGGGATGGGAAGAACTCCTTAAAAAAAGGAGTTGCTGGTGAGCGCGATGAAGTGAAATGTGATGGAGTAGCTGAAGAAGTTAAGGTTGGAGAGGGAGGGAATGGGGAATCCTCTTCTGTCCAGCAGCAAGTACCGCAGTATCAGTCTCAAGGGGCAATTATTTGTTGGGAGAAGTTCTTACATATTAGATCCCTTAAAGTCTTGCTTGTGGAGTATGATGACTGTACTCGCCATATTGTCACTGCATTGCTTCGCAATTGCAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATATTATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGCTCTTCTATACAAGATTATGGGCCACACAACACGGAAAAATGTTCCAGTGATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGCCGATTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAATCTGTGAAATCAAAGAGTCTTGAGAAGTTTGATAACAATTCGGGAAGCAATGACGAGCAAGATAATGGAAGTTTAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCTAAATCAGGCTCTCAGTGGGATCAGATAGCTGAGTGTCCCGACAGCACTTGTGCTCAAGTTGCTCATTCCAATGCTGAAATATGCAGGGGCAAGATGGTTCCTCCGGTCATAAAGGAGAGTCCAGAGCAAAAGGAACAAATAGTCAAAATTGCAGGTTCAAAACATATCAACACATTTGATGTAGGCACCTCTAAATTCAATGAGCAAATTAATAGAGGAAACCTGGAGCTTAATTGTGAGAATCAATCTGGCAAGCTAAGATGCAAAGGGCTTTCATTATCTGATGGTGTTACTAGCACTTCTGATTCTCGAATGCGAAGTGGAGAAATTGAAGCTCTAAATAGAATACCCAGGTCATCAGATATTTGCAACAAAGGTACTGATAATGACGAGGAGTTTCCATCTCTTGAGCTCAGTTTAAAGAGGCCCAGAGAAGTTAAAGAAGCTGGTACTACAAGTCAGGATGAACGGAATGTTTTAAGACATTCTGATCTGTCTGCTTTCTCAAAGTACAATGCAGCCCTTAATGCTAAGAAGTCTCCTACCAGATGTGTTGGAAGTAACTCTCCACATAATAACAGCTTAGAAGTTACAAAGAAAGATTCCTCTCTTGATGTTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCGAATGGTGGTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTTTACCAAGTTTGCTGTTATAAGTGAGCCAGCAGTGGCATCAACAACAAAATTTGTGTACAAAACATCTGCTTTCCAGCCCGTAAAGAGCAGCCTCTTGCGTACCTCTCAACAGGATTTTCATTACCATTATGCAAACCACAACAATGTTGCTAACATGCAGCCTCAGTTGCCGCCTGAGAACGATGCCGAATCTTTAAAGAAAATGACTTCTGCTGCTCCGTACTGCGGCGGCTCATCAAATGCGGTTGAAGTGCAAGTTGAAGGTAATATGGGAAATTACAGTATCAATAAAAGTGCTTCAGGCAGCAACATTGAAAGCAATGGACAAAATGGGAGCAGCACTGCAATTAATGCTGGAGGGACAAACATAGAAAGCAACAATGGACTTGTTGGGAATAGTGGTAGTGGTGATGCTAGTGGAATTGGAAGTGCAAACAGAGTAGATCGAAACAAGAATTCTCAAAGGGAAGCAGCCCTAACTAAATTTCGCCAAAAAAGAAAGGAGAGAAAGGATAAGTGCTTTCATAAACAGGTACGATATCAGAGCAGGAAGAAATTAGCTGAACAGCGACCACGCTACCGAGGACAATTTGTGCGACAGTCTTCAGACAATAATGCAAGTGAGGCAACAGATAGTTAA 2175 0.4184 MTRGNQICVDGDSKELTQCLRDGKNSLKKGVAGERDEVKCDGVAEEVKVGEGGNGESSSVQQQVPQYQSQGAIICWEKFLHIRSLKVLLVEYDDCTRHIVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDIILTEVAMPGLSGIALLYKIMGHTTRKNVPVIMMSSHDSMGLVFKCLSKGAADFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNDEQDNGSLGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSGSQWDQIAECPDSTCAQVAHSNAEICRGKMVPPVIKESPEQKEQIVKIAGSKHINTFDVGTSKFNEQINRGNLELNCENQSGKLRCKGLSLSDGVTSTSDSRMRSGEIEALNRIPRSSDICNKGTDNDEEFPSLELSLKRPREVKEAGTTSQDERNVLRHSDLSAFSKYNAALNAKKSPTRCVGSNSPHNNSLEVTKKDSSLDVQSHSSGNPPNQNSNGGSNNIDMGSTTNNAFTKFAVISEPAVASTTKFVYKTSAFQPVKSSLLRTSQQDFHYHYANHNNVANMQPQLPPENDAESLKKMTSAAPYCGGSSNAVEVQVEGNMGNYSINKSASGSNIESNGQNGSSTAINAGGTNIESNNGLVGNSGSGDASGIGSANRVDRNKNSQREAALTKFRQKRKERKDKCFHKQVRYQSRKKLAEQRPRYRGQFVRQSSDNNASEATDS 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01142 724 ProSiteProfiles CCT domain profile. 670 712 IPR010402 GO:0005515
Vifa3g01142 724 MobiDBLite consensus disorder prediction 417 437 - -
Vifa3g01142 724 MobiDBLite consensus disorder prediction 239 271 - -
Vifa3g01142 724 MobiDBLite consensus disorder prediction 455 505 - -
Vifa3g01142 724 MobiDBLite consensus disorder prediction 707 724 - -
Vifa3g01142 724 MobiDBLite consensus disorder prediction 661 676 - -
Vifa3g01142 724 Gene3D - 84 244 - -
Vifa3g01142 724 SMART REC_2 85 200 IPR001789 GO:0000160
Vifa3g01142 724 ProSiteProfiles Response regulatory domain profile. 86 204 IPR001789 GO:0000160
Vifa3g01142 724 MobiDBLite consensus disorder prediction 677 692 - -
Vifa3g01142 724 MobiDBLite consensus disorder prediction 209 226 - -
Vifa3g01142 724 PANTHER TWO-COMPONENT RESPONSE REGULATOR 85 347 IPR045279 GO:0009736
Vifa3g01142 724 Pfam CCT motif 667 712 IPR010402 GO:0005515
Vifa3g01142 724 MobiDBLite consensus disorder prediction 209 283 - -
Vifa3g01142 724 FunFam Two-component response regulator-like PRR37 85 243 - -
Vifa3g01142 724 CDD psREC_PRR 87 190 - -
Vifa3g01142 724 Pfam Response regulator receiver domain 87 198 IPR001789 GO:0000160
Vifa3g01142 724 SUPERFAMILY CheY-like 83 209 IPR011006 -
Vifa3g01142 724 MobiDBLite consensus disorder prediction 638 660 - -
Vifa3g01142 724 MobiDBLite consensus disorder prediction 638 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01142 Vifa-Chr3 297593360 297613326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01142 163 724 Response Regulator Gene Family AT5G02810 47.049 6.79e-114 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vifa3g01142 Response_reg 9.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01142 K12129 - gmx:100796933 1031.55