Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01138 ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCGAAGAAGCAGAAGGTTGTAGAAGACAAAACTTTCGGTCTCAAGAACAAAAACAAAAGCAAAGCAGTTCAGAAATATGTTCAGAATCTTAAGTCTTCCGTGCAGCCCAAAACCGACCCCAAAGTCGATGCAAAGAAAAAGAGGGAGGAAGAGAAGGCTAAAGAGAAGGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTTCCAGCTGGTGTTGATCCCAAGTCTATATTATGTGAGTTTTTTAAAGTGGGTCAGTGTGCTAAGGGCTTCAAATGCAAATTTTCGCATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATATATACAGTGATAAGCGTGACGATGATACAATGGAGGAATGGGATCAAGCGACATTGGAGAAAGTGGTGGAGTCGAAGCAAAATGAATATAATCAGAACAAACCGACTGACATTGTATGTAAACACTTTTTGGACGCAGTTGAGAGGAAGCAATATGGTTGGTTTTGGTCATGTCCCAATGGCGGTAAGAATTGTATCTATAGACATGCACTTCCACCTGGATATATTTTAAAATCCCAAATGAAGGCTTTGTTGGAGGAGGAATCTGATAAAATGCCAATTGAGGAGGAGATTGAAAAGCAGCGTGCCGAAGTGAAAACTACAACCCCTATGTCTACTGAGTTGTTCCTTCAATGGAAGAAGAAAAAGATGGACGAGAGAGAGGCTAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGATCGCATGAGTGGGCGTGAGCTGTTTCTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGATAAGTACCATAGACAACCTGAATCTGATGAAACTGAGCAGAATGGGACTGGGAGTGCCGCTGCTAATAATGGTCCCAGCACCTCAGCAACAGGTGGTGCTGATGATGAACTTCCTGATGATATTGACGATGATGATGATGATGAATTGGACTTGGATGAGTTGGATGAACTGGAAGCTAGTTTAGCCAAGACATCAATTCAAATTAAGGAAGCTGAAGCTTAA 1083 0.4201 MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPKTDPKVDAKKKREEEKAKEKELNDLFKIAVSQPKVPAGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQATLEKVVESKQNEYNQNKPTDIVCKHFLDAVERKQYGWFWSCPNGGKNCIYRHALPPGYILKSQMKALLEEESDKMPIEEEIEKQRAEVKTTTPMSTELFLQWKKKKMDEREASLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYHRQPESDETEQNGTGSAAANNGPSTSATGGADDELPDDIDDDDDDELDLDELDELEASLAKTSIQIKEAEA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01138 360 Coils Coil 341 360 - -
Vifa3g01138 360 MobiDBLite consensus disorder prediction 322 340 - -
Vifa3g01138 360 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Vifa3g01138 360 Gene3D - 85 202 - -
Vifa3g01138 360 MobiDBLite consensus disorder prediction 38 64 - -
Vifa3g01138 360 Pfam DRG Family Regulatory Proteins, Tma46 214 298 IPR032378 -
Vifa3g01138 360 MobiDBLite consensus disorder prediction 289 340 - -
Vifa3g01138 360 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Vifa3g01138 360 Gene3D - 203 277 - -
Vifa3g01138 360 Coils Coil 51 71 - -
Vifa3g01138 360 MobiDBLite consensus disorder prediction 298 317 - -
Vifa3g01138 360 MobiDBLite consensus disorder prediction 48 64 - -
Vifa3g01138 360 SMART c3hfinal6 156 193 IPR000571 GO:0046872
Vifa3g01138 360 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Vifa3g01138 360 ProSiteProfiles Zinc finger C3H1-type profile. 156 194 IPR000571 GO:0046872
Vifa3g01138 360 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 358 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g01138 DFRP_C 7.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01138 - - gmx:100783113 556.214