Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01137 ATGAACTCCAATTCTCATTCAATGTCTTCAACACCTCCAACACCTCCAACACCAACTAGTAACGATGTTTCTGGTGGCAAGAAGGTTAGAAAACCTTACACTATTACTAAGTCCAGAGAAAGCTGGTCTGATGAGGAACACGACAAGTTCATAGAAGCTCTTCAACTTTTTGATAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCTCAAAAGTACTTTTTAAAGGTTCAGAAAAACGGAACACTAGCTCATGTTCCTCCTCCTCGTCCTAAGCGGAAAGCTATTCATCCATACCCACAAAAGGCTACCAAAAATGTTTTGGTGCCACTACCAGCATCCATTGCTTATGGATCTTCCTCAAATAACCTTTTACCTGCAGGGTATGTCACATGGGATGAAACTTCCATGTTGATGAATACTTGCCAGGATGAACTCAACAATCTTCATGGAAATGAAGCTGATATTATTGGATCAAAGGGGAGTCTTAGTGGTGTTGAGGACTCTAATACAAGGCACCCCACTTCTCAGATACCAATGCAAGGGAATCAAAATCCTGCGGTTCATGGTTTGCCGGACTTTGCTGAAGTTTATGGTTTCATTGGAAGTGTTTTTGATCCAGATACAAATGGTCATGTGCAGAAGCTGAAAGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGTCCTACTTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGTGAATAATAATAAGGTCGCAGTAGAAGTTACTGATGCGAAGAAGCAGACAAATGATGTATCATGTCAAACCACATAA 870 0.3931 MNSNSHSMSSTPPTPPTPTSNDVSGGKKVRKPYTITKSRESWSDEEHDKFIEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLPASIAYGSSSNNLLPAGYVTWDETSMLMNTCQDELNNLHGNEADIIGSKGSLSGVEDSNTRHPTSQIPMQGNQNPAVHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPTFDPIKKAMSTYDVNNNKVAVEVTDAKKQTNDVSCQTT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01137 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 88 IPR017930 -
Vifa3g01137 289 MobiDBLite consensus disorder prediction 1 42 - -
Vifa3g01137 289 CDD SANT 41 84 IPR001005 -
Vifa3g01137 289 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Vifa3g01137 289 ProSiteProfiles SANT domain profile. 37 90 IPR017884 -
Vifa3g01137 289 PANTHER SWI/SNF COMPLEX-RELATED 6 249 - -
Vifa3g01137 289 Pfam Myb-like DNA-binding domain 39 84 IPR001005 -
Vifa3g01137 289 SMART sant 38 86 IPR001005 -
Vifa3g01137 289 ProSiteProfiles Myb-like domain profile. 34 84 IPR001005 -
Vifa3g01137 289 FunFam protein REVEILLE 6 isoform X1 41 89 - -
Vifa3g01137 289 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 86 IPR006447 GO:0003677
Vifa3g01137 289 Gene3D - 42 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01137 Vifa-Chr3 295949955 295951825 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g01137 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01137 - - vra:106754423 418.698