Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01136 ATGGCCGCCGCAGCTCGTCCCCTTGTCACCGTCCATTCCCTCGAAGGAGATGCCGCCACCGATTCCGCCGTCACTCTCCCCATCCCCGACGTCATGCGCGCTTCCATCCGCCCTGACATAGTCAACTTCGTTCACTCTAACATGTCAAAAAATGCCCGTCAACCCTACGCCGTCAGCCGCAAAGCCGGTCACCAAACCTCCGCTGAATCATGGGGAACCGGTCGTGCTGTGTCTCGTATCCCTCGTGTCGCCGGCGGTGGTACTCACCGTGCAGGTCAAGCTGCTTTCGGAAACATGTGTCGTGGTGGACGCATGTTTGCTCCCACCAGGATCTGGCGTAAATGGCACCGGAAGATTAACGTTAACCAGAGACGTTATGCTGTTGTCTCAGCTATTGCTGCTTCTGCTGTTCCTTCTCTTGTTCTTGCTCGAGGACACCGGATCGAGTCGGTTCCGGAGTTTCCTCTCGTTGTTGGTGATTCCGCTGAGGGAGTCGAGAAGACCAAGGAAGCAATCAAGCTTCTGAAACACATTGGAGCTTTCCCTGATGCTGAGAAAGCGAAGAACAGCCACGGAATCCGTCCAGGGAAAGGTAAGATGCGTAACCGTAGGTATATCTCTCGTAAGGGTCCTCTCATTGTTTACGGAACCGAAGGAGCTAAAGCTGTGAAAGCCTTCCGTAACATTCCTGGTGTTGAGATCACCAATGTGGAGAGGCTGAATCTCTTGAAGCTTGCACCTGGTGGACACTTGGGTAGATTTGTGATCTGGACTAAGACTGCTTTCGAGAAGTTGGATTCGATTTATGGGTCGTTTGATAAGCCTTCTGAGAAGAAGAAGGGCTATGTTCTTCCTAGGGCGAAGATGACCAACTCTGATCTTACTAGGATTATTAATTCTGATGAGGTTCAGTCTGTTGTTAGACCTGTGAAGAAGGATGTGAAACGTGCTACTTTGAAGAAGAATCCATTGAAGAATCTTAATGTTATGCTCAGGCTCAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAAGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTCGACAAGAAGAGGAAGAATATCACTAAGGAAGAAGCTTCTGCTATCAAGGCGGCAGGAAAAGCTTGGTATAATACTATGGTATCAGATTCTGATTACACAGAATTTGATAACTTTTCCAAGTGGTTGGGTGTGTCACAGTGA 1218 0.491 MAAAARPLVTVHSLEGDAATDSAVTLPIPDVMRASIRPDIVNFVHSNMSKNARQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQRRYAVVSAIAASAVPSLVLARGHRIESVPEFPLVVGDSAEGVEKTKEAIKLLKHIGAFPDAEKAKNSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFDKPSEKKKGYVLPRAKMTNSDLTRIINSDEVQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKNITKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01136 405 SUPERFAMILY Ribosomal protein L4 8 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vifa3g01136 405 FunFam 60S ribosomal protein L4 3 308 - -
Vifa3g01136 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Vifa3g01136 405 Pfam Ribosomal protein L4/L1 family 28 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vifa3g01136 405 Coils Coil 342 372 - -
Vifa3g01136 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Vifa3g01136 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vifa3g01136 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01136 Vifa-Chr3 295929780 295932045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01136 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.188 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01136 K02930 - gmx:100779764 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01136 3 295929780 295932045 Vifa3g01136 3 295929780 295932045 ECH