Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01132 ATGGAACCTTTCTTCCTTTCCTCTCTCTTATTCATCTTCCTATTTTTCTTCACTTTTTCTTCTGCTCAGATGCTAGGTTTTGTGAGTTTGGACTGTGGAGGTGATAAAAACTTCACTGATGAAATTGGTCTTAATTGGACTTCTGATGATAGAATTGCTTACGGAGAAATAAGCGCGATTTCGGTTGCGAATGAGACACGCAAGCAATACACGACGCTTCGGAACTTTCCTGCTGATTCCAGAAAATACTGCTACACACTTGATGTTGTCAGCAGGACAAGGTATCTACTGAGGGCAACATTCTTGTATGGAAACTTTGATAACAATAATGTTTATCCGAAATTCGACATTTCTATTGGGGCTACTCAATGGTCGACTATTGTTATATCGGATGTGAATACGATAGAAGTAAGAGAAATTATATTTTTGGCTTCGAGTTCTACTGTTAGTGTCTGTCTATCGAATGCAACAACGGGGAAACCGTTCATATCTACGCTTGAGCTTAGACAATTCAATGGTTCGGTTTATTTTTCGTTCTACGAGGAACATTTCTACCTCAGCGTCTCTGCAAGGATAAATTTCGGTGCAGAGACAGATGAGGCAATCAGGTATCCCGATGATCCGTTTGATAGAATTTGGGAGTCAGATTCTGTCAAGAAAGCAAATTACCTCGTCGATGTTGCTGATGGAACTGAGAAAATTTCGACCAGTGTATCCATTGATGTCAACAGAGATGAAATGCCACCGGAGAAAGTGATGCAGACAGCAGTAGTAGGTACAAATGGATCTCTAACGTACCGGTTGAACTTGGATGGTTTTCCTGGTATTGGACGAGCTTATAGCTACCTTGCAGAGATAGAAGATTTTCCTAGAAACGAATCAAGAAAATTCAGGCTAGTACTTCCAGGCCAGGCTGATATTAGTAAAGCCGTGTTAGGAAAAACAGCTGATTCTTCTCGAGGTCCTCTTCTAAATGCCATGGAGATTAATAAGTATCTAGAGAAAAATGATGGCTCTCCTGATGGAGAAGCTATATCTAGTGTGATTTCTCAGTACTCTTCAAAAGATTGGGCGAACGAAGGGGGTGATCCGTGTTTACCTGTCCCGTGGTCGTGGATCCTATGTAGCTCAGATCAACAGCCGAGAATAGTTTCAGTTTTGTTGTCTGGAAAAAACTTGACGGGCGATATTCCTTTGGACATCACTAAATTGACTGGTCTGGTTGAACTATGGCTTGATGGGAATATGCTGACAGGCCCGATACCAGATTTCACCGGATGCACGGACTTAAAGATCATTCATCTTGAGAATAACCACTTGGCAGGTGTGCTGCCAGCCTCTTTGGGGAACCTTCCGAATTTGAGGGAACTGTATGTTCAGAACAATATGTTATCTGGAACCGTACCGTCAGAGCTTTTGAGCAAAAATTTGGTTTTAAACTACTCCGGAAACAATGATCTTCATAAAGGAAGCAGAAAAAAGGACCAATTGTATGTGATTATTGGTTCAGCAGCTGGAGCCACCATATTACTTTTAGCTACTATCATATCTTGCTTGTTCATGCACAAAGGAAAGAAAAAATATTATGATCAAGACCACCTTATTTCACTCGCTACTCAAAATCCGGAGTCTAAGAGTGATGGTCATGCAGAAGTTGCTCACTGCTTCACTTTTTCTGAAATTAAAAACTATACTAATAATTTCGAGAAAAAAATTGGTTCGGGAGGTTTTGGAGTTGTTTACTATGGGAAACAGACAAATGGAAAAGAGATAGCAGTTAAGGTTTTAACTAGTAATACCTATCAAGGCAAAATAGAGTTCTCGAATGAGGTGAGTCTTTTGTCAAGAATACATCACAGAAACCTGGTGCAGCTTCTCGGTTATTGCCGAGAAGAAGGAAATAGTATGCTTATTTATGAGTTCATGCATAATGGAACTCTCAAGGAACATCTTTATGGCCCGTTAACACATGGACGGAGTATCAATTGGATTCAGCGGCTTGAGATCGCTGAAGATTCTGCCAAAGGGATTGAGTATCTTCACACAGGATGTGTCCCTGCAGTTATCCACAGAGACCTAAAAAGCAGCAACATTCTTCTAGACAGACACATGAGAGCTAAGGTTTCAGATTTTGGTCTTTCGAAACTCAATGTTGACGGAGTCTCCCATGTATCTAGCATAGTTCGGGGTACAGTAGGATATCTAGATCCTGAGTACTATATTTCTCAGCAGTTGACTGACAAGAGTGATATTTATAGTTTTGGAGTAATTCTTCTTGAACTCATATCAGGTCAAGAAGCAATATCTAATGACAGCTTTGGTGCTAATTGCAGAAACATAGTCCAATGGGCAAAGTTGCATATTGAGAGTGGTGATATACAAGGTATTATTGATCCAGCATTACGCGACGACTATGATCTACAATCGATGTGGAAAATAGCGGAGAAAGCGTTGATGTGTGTTCAACCTCATGGACACATGCGGCCATCGATTTCAGAAGTTGTGAAGGAAGTTCAAGACGCGATTGCCATTGAAAGAGAGGTGGAGAGTGTTTCGGATGAAATGACGAGAAATTCAGTTCACTCTTCGATTAATATGGGTTCTATGGATCTTGCTGCTACGGAGAATTACCTTGCGATTGATGATTCCATTGCACGCCCTACAGCACGATAG 2673 0.4089 MEPFFLSSLLFIFLFFFTFSSAQMLGFVSLDCGGDKNFTDEIGLNWTSDDRIAYGEISAISVANETRKQYTTLRNFPADSRKYCYTLDVVSRTRYLLRATFLYGNFDNNNVYPKFDISIGATQWSTIVISDVNTIEVREIIFLASSSTVSVCLSNATTGKPFISTLELRQFNGSVYFSFYEEHFYLSVSARINFGAETDEAIRYPDDPFDRIWESDSVKKANYLVDVADGTEKISTSVSIDVNRDEMPPEKVMQTAVVGTNGSLTYRLNLDGFPGIGRAYSYLAEIEDFPRNESRKFRLVLPGQADISKAVLGKTADSSRGPLLNAMEINKYLEKNDGSPDGEAISSVISQYSSKDWANEGGDPCLPVPWSWILCSSDQQPRIVSVLLSGKNLTGDIPLDITKLTGLVELWLDGNMLTGPIPDFTGCTDLKIIHLENNHLAGVLPASLGNLPNLRELYVQNNMLSGTVPSELLSKNLVLNYSGNNDLHKGSRKKDQLYVIIGSAAGATILLLATIISCLFMHKGKKKYYDQDHLISLATQNPESKSDGHAEVAHCFTFSEIKNYTNNFEKKIGSGGFGVVYYGKQTNGKEIAVKVLTSNTYQGKIEFSNEVSLLSRIHHRNLVQLLGYCREEGNSMLIYEFMHNGTLKEHLYGPLTHGRSINWIQRLEIAEDSAKGIEYLHTGCVPAVIHRDLKSSNILLDRHMRAKVSDFGLSKLNVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDSFGANCRNIVQWAKLHIESGDIQGIIDPALRDDYDLQSMWKIAEKALMCVQPHGHMRPSISEVVKEVQDAIAIEREVESVSDEMTRNSVHSSINMGSMDLAATENYLAIDDSIARPTAR 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01132 890 FunFam Leucine-rich repeat receptor-like protein kinase 543 641 - -
Vifa3g01132 890 SUPERFAMILY Protein kinase-like (PK-like) 553 850 IPR011009 -
Vifa3g01132 890 SMART serkin_6 566 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01132 890 SUPERFAMILY L domain-like 368 485 - -
Vifa3g01132 890 Gene3D Phosphorylase Kinase; domain 1 538 641 - -
Vifa3g01132 890 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 642 851 - -
Vifa3g01132 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Vifa3g01132 890 CDD STKc_IRAK 572 839 - -
Vifa3g01132 890 PANTHER OS07G0107800 PROTEIN-RELATED 427 842 - -
Vifa3g01132 890 FunFam Leucine-rich repeat protein kinase family protein 343 492 - -
Vifa3g01132 890 Pfam Protein tyrosine and serine/threonine kinase 568 774 IPR001245 GO:0004672|GO:0006468
Vifa3g01132 890 Pfam Malectin-like domain 30 307 IPR024788 -
Vifa3g01132 890 Gene3D Transferase(Phosphotransferase) domain 1 642 864 - -
Vifa3g01132 890 Gene3D Ribonuclease Inhibitor 344 496 IPR032675 -
Vifa3g01132 890 ProSitePatterns Protein kinases ATP-binding region signature. 572 594 IPR017441 GO:0005524
Vifa3g01132 890 ProSiteProfiles Protein kinase domain profile. 566 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01132 Vifa-Chr3 295570379 295574568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01132 17 676 Receptor kinase-like Gene Family AT2G37050 63.181 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa3g01132 Malectin_like 5.3e-68 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01132 - - gmx:100798007 1461.43