Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01131 ATGGAACCTTTCTTCCTTTCCTCTCTCTTATTCATCTTCCTATTTTTCTTCACTTTTTCTTCTGCTCAGATGCTAGGTTTTGTGAGTTTGGACTGTGGAGGTGATAAAAACTTCACTGATGAAATTGGTCTTAATTGGACTTCTGATGATAGAATTGCTTACGGAGAAATAAGCGCGATTTCGGTTGCGAATGAGACACGCAAGCAATACACGACGCTTCGGAACTTTCCTGCTGATTCCAGAAAATACTGCTACACACTTGATGTTGTCAGCAGGACAAGGTATCTACTGAGGGCAACATTCTTGTATGGAAACTTTGATAACAATAATGTTTATCCGAAATTCGACATTTCTATTGGGGCTACTCAATGGTCGACTATTGTTATATCGGATGTGAATACGATAGAAGTAAGAGAAATTATATTTTTGGCTTCGAGTTCTACTGTTAGTGTCTGTCTATCGAATGCAACAACGGGGAAACCGTTCATATCTACGCTTGAGCTTAGACAATTCAATGGTTCGGTTTATTTTTCGTTCTACGAGGAACATTTCTACCTCAGCGTCTCTGCAAGGATAAATTTCGGTGCAGAGACAGATGAGGCAATCAGGTATCCCGATGATCCGTTTGATAGAATTTGGGAGTCAGATTCTGTCAAGAAAGCAAATTACCTCGTCGATGTTGCTGATGGAACTGAGAAAATTTCGACCAGTGTATCCATTGATGTCAACAGAGATGAAATGCCACCGGAGAAAGTGATGCAGACAGCAGTAGTAGGTACAAATGGATCTCTAACGTACCGGTTGAACTTGGATGGTTTTCCTGGTATTGGACGAGCTTATAGCTACCTTGCAGAGATAGAAGATTTTCCTAGAAACGAATCAAGAAAATTCAGGCTAGTACTTCCAGGCCAGGCTGATATTAGTAAAGCCGTGGTAAATATCGAAGAGAATGCTCTAGGAAAATATCGCGTTTATGAACCTGGATTTAACAATATATCACTACCCTTTGTAATGTCGTTTAAGTTAGGAAAAACAGCTGATTCTTCTCGAGGTCCTCTTCTAAATGCCATGGAGATTAATAAGTATCTAGAGAAAAATGATGGCTCTCCTGATGGAGAAGCTATATCTAGTGTGATTTCTCAGTACTCTTCAAAAGATTGGGCGAACGAAGGGGGTGATCCGTGTTTACCTGTCCCGTGGTCGTGGATCCTATGTAGCTCAGATCAACAGCCGAGAATAGTTTCAGTTTTGTTGTCTGGAAAAAACTTGACGGGCGATATTCCTTTGGACATCACTAAATTGACTGGTCTGGTTGAACTATGGCTTGATGGGAATATGCTGACAGGCCCGATACCAGATTTCACCGGATGCACGGACTTAAAGATCATTCATCTTGAGAATAACCACTTGGCAGGTGTGCTGCCAGCCTCTTTGGGGAACCTTCCGAATTTGAGGGAACTGTATGTTCAGAACAATATGTTATCTGGAACCGTACCGTCAGAGCTTTTGAGCAAAAATTTGGTTTTAAACTACTCCGGAAACAATGATCTTCATAAAGGAAGCAGAAAAAAGGACCAATTGTATGTGATTATTGGTTCAGCAGCTGGAGCCACCATATTACTTTTAGCTACTATCATATCTTGCTTGTTCATGCACAAAGGAAAGAAAAAATATTATGATCAAGACCACCTTATTTCACTCGCTACTCAAAATCCGGAGTCTAAGAGTGATGGTCATGCAGAAGTTGCTCACTGCTTCACTTTTTCTGAAATTAAAAACTATACTAATAATTTCGAGAAAAAAATTGGTTCGGGAGGTTTTGGAGTTGTTTACTATGGGAAACAGACAAATGGAAAAGAGATAGCAGTTAAGGTTTTAACTAGTAATACCTATCAAGGCAAAATAGAGTTCTCGAATGAGGTGAGTCTTTTGTCAAGAATACATCACAGAAACCTGGTGCAGCTTCTCGGTTATTGCCGAGAAGAAGGAAATAGTATGCTTATTTATGAGTTCATGCATAATGGAACTCTCAAGGAACATCTTTATGGCCCGTTAACACATGGACGGAGTATCAATTGGATTCAGCGGCTTGAGATCGCTGAAGATTCTGCCAAAGGGATTGAGTATCTTCACACAGGATGTGTCCCTGCAGTTATCCACAGAGACCTAAAAAGCAGCAACATTCTTCTAGACAGACACATGAGAGCTAAGGTTTCAGATTTTGGTCTTTCGAAACTCAATGTTGACGGAGTCTCCCATGTATCTAGCATAGTTCGGGGTACAGTAGGATATCTAGATCCTGAGTACTATATTTCTCAGCAGTTGACTGACAAGAGTGATATTTATAGTTTTGGAGTAATTCTTCTTGAACTCATATCAGGTCAAGAAGCAATATCTAATGACAGCTTTGGTGCTAATTGCAGAAACATAGTCCAATGGGCAAAGTTGCATATTGAGAGTGGTGATATACAAGGTATTATTGATCCAGCATTACGCGACGACTATGATCTACAATCGATGTGGAAAATAGCGGAGAAAGCGTTGATGTGTGTTCAACCTCATGGACACATGCGGCCATCGATTTCAGAAGTTGTGAAGGAAGTTCAAGACGCGATTGCCATTGAAAGAGAGGTGGAGAGTGTTTCGGATGAAATGACGAGAAATTCAGTTCACTCTTCGATTAATATGGGTTCTATGGATCTTGCTGCTACGGAGAATTACCTTGCGATTGATGATTCCATTGCACGCCCTACAGCACGATAG 2763 0.4064 MEPFFLSSLLFIFLFFFTFSSAQMLGFVSLDCGGDKNFTDEIGLNWTSDDRIAYGEISAISVANETRKQYTTLRNFPADSRKYCYTLDVVSRTRYLLRATFLYGNFDNNNVYPKFDISIGATQWSTIVISDVNTIEVREIIFLASSSTVSVCLSNATTGKPFISTLELRQFNGSVYFSFYEEHFYLSVSARINFGAETDEAIRYPDDPFDRIWESDSVKKANYLVDVADGTEKISTSVSIDVNRDEMPPEKVMQTAVVGTNGSLTYRLNLDGFPGIGRAYSYLAEIEDFPRNESRKFRLVLPGQADISKAVVNIEENALGKYRVYEPGFNNISLPFVMSFKLGKTADSSRGPLLNAMEINKYLEKNDGSPDGEAISSVISQYSSKDWANEGGDPCLPVPWSWILCSSDQQPRIVSVLLSGKNLTGDIPLDITKLTGLVELWLDGNMLTGPIPDFTGCTDLKIIHLENNHLAGVLPASLGNLPNLRELYVQNNMLSGTVPSELLSKNLVLNYSGNNDLHKGSRKKDQLYVIIGSAAGATILLLATIISCLFMHKGKKKYYDQDHLISLATQNPESKSDGHAEVAHCFTFSEIKNYTNNFEKKIGSGGFGVVYYGKQTNGKEIAVKVLTSNTYQGKIEFSNEVSLLSRIHHRNLVQLLGYCREEGNSMLIYEFMHNGTLKEHLYGPLTHGRSINWIQRLEIAEDSAKGIEYLHTGCVPAVIHRDLKSSNILLDRHMRAKVSDFGLSKLNVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDSFGANCRNIVQWAKLHIESGDIQGIIDPALRDDYDLQSMWKIAEKALMCVQPHGHMRPSISEVVKEVQDAIAIEREVESVSDEMTRNSVHSSINMGSMDLAATENYLAIDDSIARPTAR 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01131 920 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Vifa3g01131 920 Gene3D Transferase(Phosphotransferase) domain 1 672 894 - -
Vifa3g01131 920 CDD STKc_IRAK 602 869 - -
Vifa3g01131 920 Gene3D Phosphorylase Kinase; domain 1 568 671 - -
Vifa3g01131 920 PANTHER OS07G0107800 PROTEIN-RELATED 457 872 - -
Vifa3g01131 920 ProSiteProfiles Protein kinase domain profile. 596 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01131 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Vifa3g01131 920 SMART serkin_6 596 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01131 920 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 672 881 - -
Vifa3g01131 920 Pfam Malectin-like domain 30 360 IPR024788 -
Vifa3g01131 920 SUPERFAMILY Protein kinase-like (PK-like) 583 880 IPR011009 -
Vifa3g01131 920 FunFam Leucine-rich repeat protein kinase family protein 373 522 - -
Vifa3g01131 920 FunFam Leucine-rich repeat receptor-like protein kinase 573 671 - -
Vifa3g01131 920 Pfam Protein tyrosine and serine/threonine kinase 598 804 IPR001245 GO:0004672|GO:0006468
Vifa3g01131 920 SUPERFAMILY L domain-like 398 515 - -
Vifa3g01131 920 Gene3D Ribonuclease Inhibitor 374 526 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01131 Vifa-Chr3 295570379 295574568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01131 17 706 Receptor kinase-like Gene Family AT2G37050 65.759 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa3g01131 Malectin_like 1.5e-77 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01131 - - gmx:100798007 1526.92