Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01117 ATGGGGAAGAAGCCAAATTGGTTTTCCAATGTGAAGAAAGCTCTTAGTCCTGACTCAAAGGAAAACAAACACCAGAGCTCAACTGGATCAAAGAAGAAATGGTTTAGGAAGAAAAAATTACACACTTCAGACTCATATCCAGAAACTCATCAAGCACCACCTTCTTTTCCTCCACATGAGGAGGACAATATTTTAACTCATCTTGAGAGTGAAAACAATCATGATCATGTTGAAGATGTAATAGATGTGGATGCTGATGTACATGTTCATGATGTTATAACAGAAACTTCTGAGGTTCAAGTTCAACTCACTCCAATTGTTCGGATTGTCGGTAAACCAAATGTCGAAGTCGCCGCAACCAAGATTCAAACCACTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGTTCAGGTTGAGATCGCTAATGGAAGGGCCGGTGGTAAAGCGTCAAGCCATTAGTACCCTTCGCTCTATGCAGACTTTAGCTCATGTGCAATCTGAGATTCGTTCGAGGCGGATCAGGATGTTAGAGGAGACCCAAGCTCTGCAAAAACAGCTCTTACAGAAGCACACAAAAGAGCTAGAGATAGTACAGATTGGGGAGGAATGGGATGAAAGCGTACAGTCTAGAGAACAAGTTGAAGCCAAATTACTAAGCAAATACGAGGCTACTATAAGAAGAGAAAGAGCAATGGCTTATTCCTTCACTCACCAGAAAAATGGGAGGAATTCGTCGAAATCTATAAATCCAATGTTCATGGATCCAACCAATCCTGCTTGGGGATGGAGCTGGTTGGAACGTTGGATGGCAGCCAACCAAAATCCAATAGAAAAAGAGAAGAACAACAATCCATCTGTAAAAAGTTCAGTTCGCAGCATTACCAGTTCTGAAATAAGCAAATCATTTGCTCGTTTCCAGCTGAATTCCGAAGCTCATTCTCCAACTGCCAGCCAAAATCCGGGTTCCCCTAACTTCCATTCCAATTCAAAGCCTCCGAAGCCAGCAGTTGGTAAAAAACTGAATAAGGCTAGCCCGAAAGAGAGTTTTATTCTCGACGATGACACCAAAAGCACGATGAGTATGCAGTCGGAGCGAGTCCAAAGGAGGCACTCCGTTGCTGGATCAATAGTGAGGGATGATGAAAGCCTTGCAAGCTCTCCATCAGTTCCAAGTTACATGGTGTCAACTAAATCTGCAAAAGCTAAATCCAGGTTGCAAAGTCCATTAGCTGCAGAGAATGGAACACCAGATAAAGAGTCCCTTGGAAATGCAAAGAAGCGGCTTACTTTCCCGGCTTCGCCTGCTAGACCAAGGCGGCATTCAGCTCCACCAAAGGTAGAAAGCAGCTTAAATGCAGAAATTACTGTGGGCAATGGTGTGGCTGGTTGA 1407 0.4399 MGKKPNWFSNVKKALSPDSKENKHQSSTGSKKKWFRKKKLHTSDSYPETHQAPPSFPPHEEDNILTHLESENNHDHVEDVIDVDADVHVHDVITETSEVQVQLTPIVRIVGKPNVEVAATKIQTTFRGYLARRALRALRGLFRLRSLMEGPVVKRQAISTLRSMQTLAHVQSEIRSRRIRMLEETQALQKQLLQKHTKELEIVQIGEEWDESVQSREQVEAKLLSKYEATIRRERAMAYSFTHQKNGRNSSKSINPMFMDPTNPAWGWSWLERWMAANQNPIEKEKNNNPSVKSSVRSITSSEISKSFARFQLNSEAHSPTASQNPGSPNFHSNSKPPKPAVGKKLNKASPKESFILDDDTKSTMSMQSERVQRRHSVAGSIVRDDESLASSPSVPSYMVSTKSAKAKSRLQSPLAAENGTPDKESLGNAKKRLTFPASPARPRRHSAPPKVESSLNAEITVGNGVAG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01117 468 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Vifa3g01117 468 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Vifa3g01117 468 PANTHER IQ-DOMAIN 5-RELATED 1 451 - -
Vifa3g01117 468 MobiDBLite consensus disorder prediction 316 468 - -
Vifa3g01117 468 SMART iq_5 114 136 IPR000048 GO:0005515
Vifa3g01117 468 MobiDBLite consensus disorder prediction 1 61 - -
Vifa3g01117 468 MobiDBLite consensus disorder prediction 316 335 - -
Vifa3g01117 468 Gene3D - 33 144 - -
Vifa3g01117 468 MobiDBLite consensus disorder prediction 387 409 - -
Vifa3g01117 468 MobiDBLite consensus disorder prediction 360 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01117 Vifa-Chr3 293066642 293068873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01117 1 467 IQD Protein Family AT5G03040 51.745 1.30e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01117 - - gmx:100801847 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01117 3 293066642 293068873 Vifa3g01117 3 293066642 293068873 ECH
Vifa5g02945 5 971497965 971500547 Vifa3g01117 3 293066642 293068873 PCT