Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01111 ATGCAAATCTTCGTCAAAACGCTAACTGGAAAAACCATCACACTGGAGGTTGAATCCTCCGACACCATCGACAACGTGAAGGCTAAGATTCAAGACAAGGAGGGAATTCCTCCCGATCAGCAGCGGTTGATCTTTGCCGGAAAACAGTTGGAAGACGGCCGAACCCTAGCCGACTACAACATACAGAAGGAATCAACGCTCCACCTGGTACTCCGTCTCCGCGGCGGCATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACCATCACACTGGAGGTTGAATCCTCGGACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAACAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAATATCCAGAAAGAGTCTACTCTCCATTTGGTTCTTCGCCTGCGTGGAGGGATGCAGATTTTTGTCAAGACTTTAACGGGTAAGACAATTACTTTGGAGGTGGAGAGTTCGGATACTATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAAGGGATACCACCTGATCAACAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAATATTCAGAAGGAATCTACACTTCACCTTGTTCTCAGGCTCCGTGGTGGTACCCATATATAG 696 0.4684 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTHI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01111 231 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vifa3g01111 231 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vifa3g01111 231 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vifa3g01111 231 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vifa3g01111 231 FunFam Polyubiquitin 3 153 228 - -
Vifa3g01111 231 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vifa3g01111 231 FunFam Polyubiquitin 3 1 76 - -
Vifa3g01111 231 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vifa3g01111 231 PANTHER UBIQUITIN 77 154 - -
Vifa3g01111 231 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vifa3g01111 231 CDD Ubl_ubiquitin 1 76 - -
Vifa3g01111 231 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Vifa3g01111 231 CDD Ubl_ubiquitin 77 152 - -
Vifa3g01111 231 CDD Ubl_ubiquitin 153 228 - -
Vifa3g01111 231 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vifa3g01111 231 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa3g01111 231 SMART ubq_7 77 148 IPR000626 GO:0005515
Vifa3g01111 231 SMART ubq_7 153 224 IPR000626 GO:0005515
Vifa3g01111 231 Gene3D - 77 152 - -
Vifa3g01111 231 Gene3D - 153 230 - -
Vifa3g01111 231 Gene3D - 1 76 - -
Vifa3g01111 231 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vifa3g01111 231 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vifa3g01111 231 FunFam Polyubiquitin 3 77 152 - -
Vifa3g01111 231 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vifa3g01111 231 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vifa3g01111 231 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vifa3g01111 231 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01111 Vifa-Chr3 290449393 290450088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01111 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.83e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01111 - K08770 sspl:121761454 446.047