Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01110 ATGAGCGTCATCGACCTTCTAACACGAGTCGATTCCATTTGCAAAAAGTACGACAAATACGACCTTGACAAGAACAAGGATGCCAATGTCACCGGCGACGACGCTTTCGTCAGACTCTACGCCTCCGTTGACTCCGACATCGATAACCTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAGGGAAGGCTTCTGCTGTAGCGATCAATGCAGAGATTCGTCGGACGAAGTCTCGGTTGTTGGAGGAAGTTCCTAAGTTGCAGAGGTTGGCTGTCAAAAAGGTAAAAGGGCTTTCGTCGCAAGAATTTGCTGCCCGGAATGATCTGGTTCTTGCATTACCGGAAAGAATCCAAGCTATCCCGGACGGGACTCCTGTTGCACCAAAACAAACTGGTGGCTGGGCAGCTTCTTCTGCCTCACGCGCTGAGATTAAATTTGATTCGGATGGCCGATTTGATGATGAATACTTCAAATCAACTGAGCAGTCAAGTCAATTCAGACAGGAATATGAAATGCGGAGAATAAAACAGGCAAGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCCTTGATGGATGAGATCGACACCAAGGTGGACAGGGCATCATCTGATCTTAAGAATACTAATGTTAGACTTAAAGACACGGTGAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGTATTGCTGCCTACTTATACAAGTAA 786 0.4453 MSVIDLLTRVDSICKKYDKYDLDKNKDANVTGDDAFVRLYASVDSDIDNLLQKAETASKEKGKASAVAINAEIRRTKSRLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPVAPKQTGGWAASSASRAEIKFDSDGRFDDEYFKSTEQSSQFRQEYEMRRIKQASLDMIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDRASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01110 261 SUPERFAMILY SNARE fusion complex 177 230 - -
Vifa3g01110 261 CDD SNARE_Qc 180 230 - -
Vifa3g01110 261 Pfam SNARE domain 207 256 IPR000727 -
Vifa3g01110 261 PANTHER SYNTAXIN 46 252 IPR045242 -
Vifa3g01110 261 Gene3D - 178 241 - -
Vifa3g01110 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vifa3g01110 261 SMART tSNARE_6 165 232 IPR000727 -
Vifa3g01110 261 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa3g01110 261 FunFam Putative syntaxin-71-like 171 231 - -
Vifa3g01110 261 Coils Coil 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01110 Vifa-Chr3 290435957 290437518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01110 1 260 SNARE and Associated Proteins AT3G09740 75.573 2.56e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01110 K08506 - gmx:100819272 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01110 3 290435957 290437518 Vifa3g01110 3 290435957 290437518 ECH