Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01109 ATGAGCGTCATCGACCTTCTAACACGAGTCGATTCCATTTGCAAAAAGTACGACAAATACGACCTTGACAAGAACAAGGATGCCAATGTCACCGGCGACGACGCTTTCGTCAGACTCTACGCCTCCGTTGACTCCGACATCGATAACCTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAGGGAAGGCTTCTGCTGTAGCGATCAATGCAGAGATTCGTCGGACGAAGTCTCGGTTGTTGGAGGAAGTTCCTAAGTTGCAGAGGTTGGCTGTCAAAAAGGTAAAAGGGCTTTCGTCGCAAGAATTTGCTGCCCGGAATGATCTGGTTCTTGCATTACCGGAAAGAATCCAAGCTATCCCGGACGGGACTCCTGTTGCACCAAAACAAACTGGTGGCTGGGCAGCTTCTTCTGCCTCACGCGCTGAGATTAAATTTGATTCGGATGGCCGATTTGATGATGAATACTTCAAATCAACTGAGCAGTCAAGTCAATTCAGACAGGAATATGAAATGCGGAGAATAAAACAGGATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCCTTGATGGATGAGATCGACACCAAGGTGGACAGGGCATCATCTGATCTTAAGAATACTAATGTTAGACTTAAAGACACGGTGAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGTATTGCTGCCTACTTATACAAGTAA 789 0.4449 MSVIDLLTRVDSICKKYDKYDLDKNKDANVTGDDAFVRLYASVDSDIDNLLQKAETASKEKGKASAVAINAEIRRTKSRLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPVAPKQTGGWAASSASRAEIKFDSDGRFDDEYFKSTEQSSQFRQEYEMRRIKQDQGLDMIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDRASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01109 262 CDD SNARE_Qc 176 231 - -
Vifa3g01109 262 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa3g01109 262 Gene3D - 171 232 - -
Vifa3g01109 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Vifa3g01109 262 Pfam SNARE domain 208 257 IPR000727 -
Vifa3g01109 262 PANTHER SYNTAXIN 46 253 IPR045242 -
Vifa3g01109 262 SUPERFAMILY SNARE fusion complex 164 231 - -
Vifa3g01109 262 FunFam Putative syntaxin-71-like 171 232 - -
Vifa3g01109 262 SMART tSNARE_6 166 233 IPR000727 -
Vifa3g01109 262 Coils Coil 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01109 Vifa-Chr3 290435957 290437518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01109 1 261 SNARE and Associated Proteins AT3G09740 76.336 4.02e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01109 K08506 - gmx:100819272 433.335