Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01108 ATGCAAATGATTCCCAATGACCCTTTTTCACTTTCCACTTCACTTGCTGCCTTTACTCAAGAACAAAACACAAACCCTAACCCTAAACCTAATACTCCTCCTGTCCCCAAGAAGAAGCGAAATCTCCCCGGAACACCAGATCCAGATGCCGAGGTTATTGCTCTTTCGCCGAAGACACTCATGGCGACAAACAGATTCATCTGTGAAATATGCAACAAAGGTTTCCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGTCACAACCTTCCATGGAAGCTTAGACAGAGATCAAACAAAGATGTTATCAAGAAGAAAGTTTACATCTGTCCAGAGAAGAGTTGTGTGCACCATGACCCTTCTAGAGCTCTTGGAGACCTCACTGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCCAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGAAGGATAGTTTCATAACACATAGAGCTTTCTGTGATGCATTGGCAGAAGAGAGTGCAAGGATAACTTCAGTTACGACAACGAATCTAAATTTCAAGAATGAAGAAGGTGGTGGTTCAATGATGGGTTCACATTCACATTCACAACATGGTTTAAACCATGGAAATGGAATGCTTCAAAATATAGGAGGAATTCCACATCCACAATTTGGTTCACAAGGATTTCATGTAGATTTCAATGGAATTGGAATCAACAACAACCAGAATAGTTCTTTGATTATGGAGCAACAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAACCCACATAATCAGATAACTGAAATGGGACAAAGTTCAGGACTTTTTGGTTCATCAGGTTTATCTGAGATAGTTCAAATGGGAAATGCTGATATGAATAATAATACCTTGATTGGTTCTTCATCATCAATGTTGTCTAGTTATGGTGTACCTGCTTCAAATTCAACACCTGCAAATCTTTCATTATCTTCACTTCCAATAGGGAAAAGAGGAGAAAGTTCAACAAGTTCTGTTTATAATTCAGATGGTCAAAATAAGCAATTATCAAAGGCTGTTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCTAAAAGCAGCTCAAATAGGTTCAACTAGAAGCACTTCTAATAATAATATGAACAACAATGGTTCTATTTTTAGTGCTAGTTTTGGTGTAATGACATCACCTTCTTCTTCAAATAGTAGTTTTGATCAGTTTTTGATGCATGGACAAGAAAGTGAACAAGGGAAAATGAATCTCTTGCATCATGGTGGTTCAAATTCTATGGATCAAGTTCAACATAGTAATTTGACAAGAGATTTTCTTGGTGTGAGTGGAACAAGTGGTCCTCCTCAGTTTCTACCTCAAGAGCTAGCAAAATTTGCTTCTTCCATTCAATTCACAGGAAACCAGTGA 1503 0.3826 MQMIPNDPFSLSTSLAAFTQEQNTNPNPKPNTPPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVTTTNLNFKNEEGGGSMMGSHSHSQHGLNHGNGMLQNIGGIPHPQFGSQGFHVDFNGIGINNNQNSSLIMEQQQRPSLSLWLNQGNPHNQITEMGQSSGLFGSSGLSEIVQMGNADMNNNTLIGSSSSMLSSYGVPASNSTPANLSLSSLPIGKRGESSTSSVYNSDGQNKQLSKAVSATPMSATALLLKAAQIGSTRSTSNNNMNNNGSIFSASFGVMTSPSSSNSSFDQFLMHGQESEQGKMNLLHHGGSNSMDQVQHSNLTRDFLGVSGTSGPPQFLPQELAKFASSIQFTGNQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01108 500 Gene3D Classic Zinc Finger 44 119 - -
Vifa3g01108 500 SMART c2h2final6 108 138 IPR013087 -
Vifa3g01108 500 SMART c2h2final6 143 163 IPR013087 -
Vifa3g01108 500 SMART c2h2final6 66 88 IPR013087 -
Vifa3g01108 500 Gene3D Classic Zinc Finger 120 201 - -
Vifa3g01108 500 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Vifa3g01108 500 FunFam protein indeterminate-domain 12-like 45 114 - -
Vifa3g01108 500 MobiDBLite consensus disorder prediction 347 380 - -
Vifa3g01108 500 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Vifa3g01108 500 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g01108 500 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Vifa3g01108 500 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vifa3g01108 500 MobiDBLite consensus disorder prediction 27 41 - -
Vifa3g01108 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vifa3g01108 500 MobiDBLite consensus disorder prediction 1 48 - -
Vifa3g01108 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 480 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01108 Vifa-Chr3 289816691 289818666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01108 1 491 IDZ Gene Family AT5G03150 45.276 2.30e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01108 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01108 K25870 - gmx:100801182 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01108 3 289816691 289818666 Vifa3g01108 3 289816691 289818666 ECH
Vifa5g02962 5 978012958 978014469 Vifa3g01108 3 289816691 289818666 PCT