Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01107 ATGGCAACTCAAGTTTCCATTGATGATGATAATAACCAAGGTGCTGGTAGCATTGAAAATAGAGTTCATATCTCAATTCAAAAGGGCATGGCATCATCTGAAATAACTGAGGAACTTACAAGTGGACAAAGAACAGCTCAAAACCTTAGCATAGAGACACCAAAAACAACTCAAGAAGAAGCAAAAGAAGATTTCTTGAGAATCAACATACCTCTAACTCCATCACCAAGAAGAGTGATATTTTCTCCTTGTGCAAGTCCTGGTGTCCTTCCAAACAGTGATTCCCCTGGTGCTTCTAGTTCTAAAAACAGATCAACTCTTAAAAAATCTCTTATACCAAAACTCAGTTTCAAATTCAAGAACACAACTTCTGAGATTGAAAAAGCCGCTTTCCTTGCACTCGAAGGTTCGTCCACAGTTTCATCGAAAAAGCCTTTTCTTTCTAGGACGTTGTCTCGTATCAAATTGAAAGGGAGTAAAACGTCTTCCTTACCTGTATCGCCGGTTCCTCGTTCAAATCCCGCGTCTGTACATGGCGGGAAAGCTTATCCAGCAATGGCCAGTGAGAAAGTTCCGCGGTTACCAATTCATCGTTCGCGATCTGTTCCTGCATTTACTGGAGAAGATACTTCTGTAGGTGGCAGGTTTCGAGTTTTTAGGATGATACCACAATTGAATGAGAAAAATTCCACCACAACATTTGCAGCATCTCCAACTGGTGAAAATGTTGAAACAGAGGATGGAGGCGAAGATATTCATGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCAGAGAATTTTAAATTGGAATGTAGCTGCAAAGGTGAGCTTTCACTAGCACATAAAGAATGCGCGGTTAAATGGTTTGGAATTAAAGGTAATAGGACATGTGATGTGTGCAAACAAGAAGTTCAGAACTTACCTGTCACTCTTTTACGGCTTCATAGCGCTAGCTTGCAATCGAACAGAGGTCACTTAGACGAATCTTCTCAATACAGGGTCTGGCAGGATGCCCCGATTCTTGTCATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGATCCAGTGCTATTGCCATGTCGCTTCCGTTTTCATGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTGAGGAGAAAATATGTTTGGGTTTATGGAACCATCCAGTTTTGTTTAGTGGTTGTTGCTGGACATCTTCTTTACTCAGTGGCTCATATGGAAGCTGTTTTGGCAATTCTACTAGCTACATTTGCTGGGTTTGGATCTATAATGTGTGGAACAAGTATTCTTATGGAGATATTGAAATGGAGGAGAAGATGGCTTGCTCAGTGGAATCAACAGAATGGCGATTCCGCGGACGCGGTTCCGCCCGATCAATCATCTGCAACCACTATTCCAGCTCAAAGTGATTCTCAACATATTGAGAGTAATGTGGGAAATTCTCCTAGGCAAATGAGCTGA 1512 0.416 MATQVSIDDDNNQGAGSIENRVHISIQKGMASSEITEELTSGQRTAQNLSIETPKTTQEEAKEDFLRINIPLTPSPRRVIFSPCASPGVLPNSDSPGASSSKNRSTLKKSLIPKLSFKFKNTTSEIEKAAFLALEGSSTVSSKKPFLSRTLSRIKLKGSKTSSLPVSPVPRSNPASVHGGKAYPAMASEKVPRLPIHRSRSVPAFTGEDTSVGGRFRVFRMIPQLNEKNSTTTFAASPTGENVETEDGGEDIHEEEAVCRICMVELGEGAENFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHSASLQSNRGHLDESSQYRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSSAIAMSLPFSCILGLLASMTATTMVRRKYVWVYGTIQFCLVVVAGHLLYSVAHMEAVLAILLATFAGFGSIMCGTSILMEILKWRRRWLAQWNQQNGDSADAVPPDQSSATTIPAQSDSQHIESNVGNSPRQMS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01107 503 MobiDBLite consensus disorder prediction 36 59 - -
Vifa3g01107 503 CDD RING_CH-C4HC3_MARCH 259 307 - -
Vifa3g01107 503 SUPERFAMILY RING/U-box 255 310 - -
Vifa3g01107 503 SMART ringv_2 258 307 IPR011016 GO:0008270
Vifa3g01107 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 314 IPR013083 -
Vifa3g01107 503 Pfam RING-variant domain 259 306 IPR011016 GO:0008270
Vifa3g01107 503 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g01107 503 MobiDBLite consensus disorder prediction 160 181 - -
Vifa3g01107 503 PANTHER OS02G0165000 PROTEIN 30 471 - -
Vifa3g01107 503 MobiDBLite consensus disorder prediction 36 55 - -
Vifa3g01107 503 MobiDBLite consensus disorder prediction 231 250 - -
Vifa3g01107 503 MobiDBLite consensus disorder prediction 465 503 - -
Vifa3g01107 503 ProSiteProfiles Zinc finger RING-CH-type profile. 251 313 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01107 Vifa-Chr3 289491370 289494999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01107 256 313 C3H Transcription Factor Family AT2G37950 44.262 8.44e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01107 - - tpra:123922782 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01107 3 289491370 289494999 Vifa3g01107 3 289491370 289494999 ECH