Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01105 ATGGGTAACGTAGGAAGTTCTCACAGTCGTCGGAGACACGGTGGTGGCGGTGGAAGTGGCCGACGTGTTCATCCGCCGGTGACTCCTCCTCTACAAGAAGCTGCGGCTAATCAGTTTGCTCACCCTGCCGCTGCTCAACCGTATCAGAATTACCCGAATAACTATCCTCCGCCGGCGAGTGTTCCGATGCCTTTACCGGCGCCGTATGACCATCATCACCGGACGGCGATGGACCCGGTATATGGACGGTATCCGACGCTACCACAGGTGCCGGCGCCGTATGTGGAACATCAGAAAGCTGTTACTATTAGGAATGATGTTAATATTAAGAAGGAGACACTGAGGATTGAAGCTGATGAGGAAAATCCTGGGCAGTTTCTTGTTAAGTTTACTTTTGATGCCACTGTTTCCGGAAGCATCGCGGTACTTTTCTTTGCAAAAGAAGGCGATGGGTGTGTCCTTACCTCGACAAAGGAAAATGTTCTTGCACCGGTTATCATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCATCTGGAACTGGTATCAATTTCTCAATGTTTGAGGAATCTGAGCTATTGAAAGTGGGCGACTTGAACGTCTATCCTGTAGCAGTTAAAGCAGATGCATCTTCCGGTGCCGAGGATGGATCAAACGTGACTCCTAAATCTGGCAGCAAAACAAACACAAACAACTCTCAGATAACTCAAGCCGTATTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATAATGTGGGTGAACGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTTGAAAGTGACTTGGATGGGAATGACCCCGGAAAAGAGTGTGTAATCTGTTTGTCAGAACCTCGCGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGGATGCGCGAAGGTCTTACGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAAATCAGAGTTGGGCCTGAGCCTGAGCCTGAGCCTGAGCCAAAGGCCGAGCCCAAGGAGTGA 1071 0.4893 MGNVGSSHSRRRHGGGGGSGRRVHPPVTPPLQEAAANQFAHPAAAQPYQNYPNNYPPPASVPMPLPAPYDHHHRTAMDPVYGRYPTLPQVPAPYVEHQKAVTIRNDVNIKKETLRIEADEENPGQFLVKFTFDATVSGSIAVLFFAKEGDGCVLTSTKENVLAPVIINFQQGLGQKFRQPSGTGINFSMFEESELLKVGDLNVYPVAVKADASSGAEDGSNVTPKSGSKTNTNNSQITQAVFEKEKGEFRVKVVKQIMWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIRVGPEPEPEPEPKAEPKE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01105 356 MobiDBLite consensus disorder prediction 216 235 - -
Vifa3g01105 356 ProSiteProfiles Zinc finger RING-type profile. 290 329 IPR001841 -
Vifa3g01105 356 MobiDBLite consensus disorder prediction 213 235 - -
Vifa3g01105 356 Pfam Zinc finger, C3HC4 type (RING finger) 288 334 - -
Vifa3g01105 356 SUPERFAMILY RING/U-box 289 335 - -
Vifa3g01105 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 339 IPR013083 -
Vifa3g01105 356 MobiDBLite consensus disorder prediction 1 29 - -
Vifa3g01105 356 FunFam probable E3 ubiquitin-protein ligase LOG2 274 339 - -
Vifa3g01105 356 SMART ring_2 290 328 IPR001841 -
Vifa3g01105 356 PANTHER MAHOGUNIN 1 339 IPR045194 GO:0061630
Vifa3g01105 356 CDD mRING-HC-C3HC5_MGRN1-like 288 329 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01105 Vifa-Chr3 289171330 289174077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01105 82 309 C3H Transcription Factor Family AT3G09770 64.135 5.47e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01105 - - gmx:100789032 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01105 3 289171330 289174077 Vifa3g01105 3 289171330 289174077 ECH