Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01100 ATGCAAATTCCGTTTAAGTTTAACCCTTCTCAATTATCATCATCAGTTTTCTTCATTCTTCTCTCTTTCTGTTATTCTGCAAATGGGTTTGGAACCATGGGACCAATCTCAGCTTCTTTCGGCGAATACGAAGTGTTCTGCTCCATTGACGCAAGTGGAAAACAAGATGTTATTTGTTGGGGCAAAAACACCACCTCACTGCAAACTCCTTCGTCGTCCTCTTATGTTACTAACATTCCTGCCATGTCTGCGCTTTCTGGGGGTGAAGGTTTTCTATGCGGGATTTTAGCAAACACTTCGCAGGCGTTTTGTTGGGCTGCTACTTCGAAACAAAACGCAGATCCCGTTTTGGTTCCTGCGATGTATAGGAACACTGCTTACTCTCGTATAGCGGCTGGAAAGAATCATGTATGTGCTGTTAGAGGATCTTACTACTCGGATCGTGATTCCGGAACGGTTGATTGCTGGGGAGTCTCGAAGAAACGTAAGAACGGTACGTTAACGTTAACGGCGGTGGTTAATGATTTGTTCTCTGATCAATCTGTTGTTAACCTTGAAATGAATAGTGTTGTTTCCGGCGAAGGGTTTACATGTGGTGGGGTTAGAGATGGAGGGTTGGTTTGTTGGGGGCCTAATTCAACAAGCTTGAAGGTTTCAAATGTTAGTGATAGTTTTTCTGTTTTATCCGCGGGGAGGACGGCGGTGTGCGGTGTTTCAAATGTCTCCGGAGATGTGAGATGCTGGGGGGATATAGAGCCTCCGACGACAACCGAGGTTTGTTTCGTTTCGCTATCTGGCGGGGCGCATCATTTCTGCGGCGTTCGAGAGGATAATCATGTGGTTCAATGCTGGGGGAACTTGAGTTCATCTTTGGTTCCAAAAGGTTATGGCTTTTTGGCAATTGCTTCTTCGGATTATACTACTTGTGGTATAAGGGAAGATGATCTTCTTCTGGATTGTTGGTTGGTCAACGCTTCAAAGGCTGATTTTGATCCTCCTTTAGAGCTTTCAAGTCCTGGTCTTTGCAAGTCAAGTTCTTGTGGAGTCAATGAGTTTGATTTCAATGTTAGTGTTCTTAATGAGCCTGATTTGACGAGTTTGTGTGTGAGACAGGATTTGAGGATTTGTTCGCCTTGTGGGTATAATTGTTCACAAGGATTCTTTTTGTCGAGTATTTGTACTCGAAATTCTGATAGAGTTTGCACAGCTTGTTCTTTATGTCAGAACAGTTCTTGTTTGAGTGTTTGCAGACTTCATTCTTCCAACGGGTTTTTTCATTGGCGTCATATCCGTAGATGGGTTGTCATAGTTGGATCTTCTGCTTTGTGTTTGTTGCTGATTTTGGTTTGTGGTTGTTTTTGGGGATGCTGTGCTTGTTCAAGAGGACAACTACATGGGACAAAGAAACAATCCAAGTCATGTATTGGTAAACATGAACAAGAAGACCATGATGACGTGATTGGTATTAGTAATGGTCATCTTCACTCGTTTCCTTCGGCTGGTTCTTGTCCTGGTTTGCCTCAGGTTTTCAGGCTTTCGGAGTTAAAAGACGCTACAAATGGTTTCAAGGAGTTTAATGAGCTTGGAAGAGGAAGTCATGGATTTGTTTACAAAGCTAATTTGGGGGATGGGAGAGTGGTTGCGGTGAAACGAGCAAACGCTGCCACAATAATACACACAAACAATCGCGAATTTGAAATGGAGTTGGAAATTTTGTGCAAAATTCGTCACTGTAATGTTGTTAACTTGTTGGGTTATTGTGCTGAAATGGGAGAGAGGTTGCTTGTTTATGAGTATATGTCTCATGGAACACTTTCTGATCACATTCATGGTGGTCTTTCTCCTCTTAATTGGAGCTTAAGGCTTAAGATAGCTATGCAATCAGCAAAGGGGGTTGAGTATCTTCACAAGGAGCTATTGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCCAGCATACTTTTGGATTCAGAATGGGGGGCTAGAGTTTCTGATTTCGGACTTGTTACATCGAGTGATAAAGATCTAAACGGGGATTTGGAAAGCGATGTTTACAGCTTCGGGATAGTGCTGTTGGAGATTCTAAGCGGAAGAAAGGCTCATGATATAGATTTTGATCCACCTAATGTTGTCGAATGGGCAGTGCCTTTGATCAAACAAGGTAAAGCGGCTGCACTAATTGATCGCAGCGTCGCTCTTCCAAGAAATGTCGAGCCTTTGCTTAAGCTTGGCGATATAGCAGAGCTGGCTGTGAGAGAGAATCCGAGTGAGCGTCCATCTATGTCGGATATAGCATCTTGGTTGGAGCAGATTGTGAAGGATGGATTGATCTTATAA 2337 0.4309 MQIPFKFNPSQLSSSVFFILLSFCYSANGFGTMGPISASFGEYEVFCSIDASGKQDVICWGKNTTSLQTPSSSSYVTNIPAMSALSGGEGFLCGILANTSQAFCWAATSKQNADPVLVPAMYRNTAYSRIAAGKNHVCAVRGSYYSDRDSGTVDCWGVSKKRKNGTLTLTAVVNDLFSDQSVVNLEMNSVVSGEGFTCGGVRDGGLVCWGPNSTSLKVSNVSDSFSVLSAGRTAVCGVSNVSGDVRCWGDIEPPTTTEVCFVSLSGGAHHFCGVREDNHVVQCWGNLSSSLVPKGYGFLAIASSDYTTCGIREDDLLLDCWLVNASKADFDPPLELSSPGLCKSSSCGVNEFDFNVSVLNEPDLTSLCVRQDLRICSPCGYNCSQGFFLSSICTRNSDRVCTACSLCQNSSCLSVCRLHSSNGFFHWRHIRRWVVIVGSSALCLLLILVCGCFWGCCACSRGQLHGTKKQSKSCIGKHEQEDHDDVIGISNGHLHSFPSAGSCPGLPQVFRLSELKDATNGFKEFNELGRGSHGFVYKANLGDGRVVAVKRANAATIIHTNNREFEMELEILCKIRHCNVVNLLGYCAEMGERLLVYEYMSHGTLSDHIHGGLSPLNWSLRLKIAMQSAKGVEYLHKELLPPIVHKDLKSSSILLDSEWGARVSDFGLVTSSDKDLNGDLESDVYSFGIVLLEILSGRKAHDIDFDPPNVVEWAVPLIKQGKAAALIDRSVALPRNVEPLLKLGDIAELAVRENPSERPSMSDIASWLEQIVKDGLIL 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01100 778 Gene3D - 69 337 IPR009091 -
Vifa3g01100 778 FunFam Serine/threonine-protein kinase-like protein CCR1 677 775 - -
Vifa3g01100 778 Gene3D Transferase(Phosphotransferase) domain 1 678 775 - -
Vifa3g01100 778 Gene3D Transferase(Phosphotransferase) domain 1 600 677 - -
Vifa3g01100 778 Pfam Protein tyrosine and serine/threonine kinase 526 673 IPR001245 GO:0004672|GO:0006468
Vifa3g01100 778 SUPERFAMILY RCC1/BLIP-II 42 289 IPR009091 -
Vifa3g01100 778 SUPERFAMILY Protein kinase-like (PK-like) 499 769 IPR011009 -
Vifa3g01100 778 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 15 772 - -
Vifa3g01100 778 FunFam serine/threonine-protein kinase-like protein CCR1 492 599 - -
Vifa3g01100 778 Gene3D Phosphorylase Kinase; domain 1 502 599 - -
Vifa3g01100 778 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Vifa3g01100 778 ProSiteProfiles Protein kinase domain profile. 522 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01100 Vifa-Chr3 286273157 286275493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01100 27 772 Receptor kinase-like Gene Family AT3G59420 32.302 2.03e-111 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa3g01100 PK_Tyr_Ser-Thr 3.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01100 - - gmx:100802259 1154.81