Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01092 ATGAATACATTTATGGATTCAAGAAATTGTAAATCATTAAAAGAAGATGAAAGGTGTTTAGATCCTCAGTTATGGCATGCTTGTGCTGGTGGAATGATTCAGATGCCGGCGGTGAACAGTAGAGTTTATTATTTTCCTCAAGGTCATGCTGAACATGCATGTGGAGTTGTTAACTTCATGAACTGTCCAAAGGTGGAACCTTTGATTCCATGCAAAGTTTTTGAGGTTAAGTTTATGGCTGATCCTGAGACTGATGAGGTTTATGCTAAGATTAAGCTTGTTCCTTTGAGTGGAAAAGGAAATGATGGTGTACATTATGACAATGATGTTGTTGGTGTTGAGAGTCAAGATAAGCCGGCTTCGTTTGCGAAGACATTGACGCAATCTGATGCGAATAATGGTGGAGGTTTTTCGGTTCCTAGGTATTGTGCTGAGACGATTTTTCCTCGGTTGGATTACGCGGCGGATCCTCCTCTTCAGAATATTTTGGCTAAAGATGTTCACGGCGAGACGTGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGAGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCTGGTGATTCCATTGTGTTTTTGAGGGCGGAAAACGGTGATCTTTGTGTCGGGATTCGGCGAGCGAAGAAGGGTATCGGTGGTGGACATGAGGATCCGTCAGGGTGGAATCCGGTAGGAGAAAAGTTTCCTCTACCTTGGTTTGCACAGAACGAGAATCAAATGATGAGAAACATTAACAATAACATTAACAACAACAATGGTTTGAACTCGAGCGCGAATGTGACGGGAAGGGAAAGAGTTAGGCCAGAAGCGGTCCTTGAAGCAATAACTTTAGCTGCGAATAAGCAACCGTTTGAGGTTGTTTACTACCCTCGCGCAAGTACACCCGAGTTTTGTGTTAAGGCGCATTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGCCATTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGACTTCTTCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTGAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCAATAAACCTTTCGCCATTCTCACAGCCAAGGAAGAAATTGAGAATGTCGCCAAACTCAGATTTCCCCCTCGACGGCCAAATTCCGGTGCCAACCTTTCCTAGTAACCTTCTAGGTACGAGCAACCTATTTCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTGTTCCAATATCGGATCTCCACCTCAGTAAAGTTCAGTCGGGTCAATTTCCGGCCAGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAATGTCTCTAATAACCTAATGATGCCAAAATCTAGCATGAGTGAAAATGTCTCTTGCTTACTATCTATGGCAAGTTCTACTCAATCTTCGAGGAAATTCGACGACGAGAAGAAACCTCAGCTTGTGCTTTTCGGCCAAAAAATTCTAACGGAGCAACAGATCTCTAATGACCGTTCATCAGATGGAAATGCTGATAAAATGAGTAATTTTTCCGATGGTTCGGGAACTCCACTTCATCAACAAGGCTTACGAAAACGCTCCTCTTGTGAGACCGAGGCGAGTTTGGACAGTACTGATCACTGTAAAGTTTTTCTCGAATCAGAAGATATCGGTCGAACAATTGATCTATCGTTACTTGAATCTTATGATGAACTGTACAGAAAACTCGCAGACATGTTTGGCATAGAAAAGTACGAAAAGGTAAGCCGCGTGCTCTACCGCGATATATCAGGAGCAGTCAAACACATTGGAGATGAACCATTCAGTAACTTCACAAGAACAGCAAGGAGATTGACAATTCTAATGGATTCAAACAAATAA 2022 0.4293 MNTFMDSRNCKSLKEDERCLDPQLWHACAGGMIQMPAVNSRVYYFPQGHAEHACGVVNFMNCPKVEPLIPCKVFEVKFMADPETDEVYAKIKLVPLSGKGNDGVHYDNDVVGVESQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGEKFPLPWFAQNENQMMRNINNNINNNNGLNSSANVTGRERVRPEAVLEAITLAANKQPFEVVYYPRASTPEFCVKAHLVEAAMQIRWCSGIRFKMPFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRMSPNSDFPLDGQIPVPTFPSNLLGTSNLFRCLPENTPAGMQGARHAHYGVPISDLHLSKVQSGQFPASFVPFDHAAKLPNVSNNLMMPKSSMSENVSCLLSMASSTQSSRKFDDEKKPQLVLFGQKILTEQQISNDRSSDGNADKMSNFSDGSGTPLHQQGLRKRSSCETEASLDSTDHCKVFLESEDIGRTIDLSLLESYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGDEPFSNFTRTARRLTILMDSNK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01092 673 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa3g01092 673 CDD B3_DNA 121 222 IPR003340 GO:0003677
Vifa3g01092 673 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Vifa3g01092 673 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa3g01092 673 FunFam Auxin response factor 120 224 - -
Vifa3g01092 673 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Vifa3g01092 673 SUPERFAMILY DNA-binding pseudobarrel domain 112 232 IPR015300 -
Vifa3g01092 673 Gene3D - 327 401 - -
Vifa3g01092 673 MobiDBLite consensus disorder prediction 548 578 - -
Vifa3g01092 673 MobiDBLite consensus disorder prediction 548 585 - -
Vifa3g01092 673 Gene3D - 588 673 - -
Vifa3g01092 673 FunFam Auxin response factor 328 401 - -
Vifa3g01092 673 Gene3D - 120 224 IPR015300 -
Vifa3g01092 673 ProSiteProfiles PB1 domain profile. 592 672 IPR000270 GO:0005515
Vifa3g01092 673 SMART B3_2 122 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01092 Vifa-Chr3 283680853 283683549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01092 17 670 B3 DNA Binding Superfamily AT4G30080 55.096 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa3g01092 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01092 - - gmx:100796522 973