Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01087 ATGGTTTCTGTTAAATCAAGATCTGTAAGGTTTCATGATGATCTTGAAAAAGAGAAATTAAATGAAGTTGAAGAAAATCAAATGGAAATGGCGACGTATGAGATGAGTAATCAACACAAGCATGTAAAGGATGCGAAAAACAAGTCATCATCAAATGGAAAAGAACTTTCAAGAGTGTTTTCTGAAGATTATGATGCAGAAGAGATTTTAATATTAGATCCTAGAGGGCCTAGAGTGAATATATGGAACAAAATATTCTTAGCAGCGTGTTTGATATCGCTGTTTGTGGATCCACTTTTCTTTTACTTACCTGTTGCTAAGAAAGAAAAGTGCATTGATATGTCACTTGGTCTTGAAGTTTCACTTACCATAATAAGAGGCGAACTCATTATTGACTCATCGAAGATTGCTTCAAATTATCTCAGTAGAGACTTTTGGTTTGATCTTGTTGCCGCACTACCACTTCCTCAGGTACTGATTTGGGCTGTAATTCCAAATCTGAGAGGGTCTGAAATGATTGCATCGAGGCATATATTGCGCCTCGTGTCGATTTTCCAGTACTTATTGAGGCTGTATCTTATTTATCCTCTGTCATCTGTAATTGTCAAGGCGAACGGGGTAATGATGGAGAAAGCTTGGGCTGGTGCAGCCTATAACTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACATGGTACCTGTTATCAATTGAAAGACAAGATGAATGCTGGAAGAAAGCTTGTACACTTGAATTTTCACATTGTCGGTATCATTATCTTGATTGTCGAAGCCTTGGCGATCCAAATAGGAACTCTTGGCTTAGATCGAGCAATGTCTCGGGTCTATGCGATGATAACAGTGCCTTCTTTCAGTTTGGAATTTTCGCTGATGCTTTGACTTTGGAAATAACTAGCTCGAAATTCTTAAACAAATATTATTACTGTCTATGGTGGGGATTGAGAAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGTACACATGTTCCTGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTCATAGGCAATATGCAAACATACCTTCAATCGACCACTATACGGCTGGAGGAGTGGAGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAGCTTCCTCGTTACCTAAAGCAAAATGTTCGACGCCATGACCAATTCAGATGGGTGGCTACTCGTGGTGTTGACGAGGAAGCTATTCTTAGAGACCTTCCTGTTGATCTAAGACGTGATATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAGATGGATGACAGAATGTTAGATGCAATATGTGAAAGGCTGAAACCAACTCTATGCAGTCCCGGAACTTGCATAGTTCGCGAATGCGACCCGGTCAACGAGATGCTCTTCATTGTTCGAGGACGCCTAGATTCTTGCACAACCAACGGTGGCAGAACTGGTTTCTTCAACACCTGCAGAATAGGCTCGGGCGACTTCTGTGGGGAAGAGCTTCTCCCATGGGCCTTAGACCCTCGTCCAACCGTTGTTCTTCCTTCTTCAACACGAACGGTGAAAGCCATAACCGAAGTTGAAGCTTTCGCACTCATTGCCGAGGATTTAAAATTTGTAGCAGCGCAATTCCGCCGCTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCGCATCAGTGGCGGACATGGGCGGCGTGTTTTATACAAGCGGCTTGGTTTCGGTATAAAAGAATGAAAGAGATAAATGAGGTTAAGGAAAAGGAGAATCTCATGATGATGGCAAATGTGAAATATTATGGACATGATGATTCTCAATATTTTTCTGCACCTTTGCAGGCTCCAATGGGATCAAGTTATTCAATGTATTCTGGAAAACTTGTAGGTAGTTTAAGGAAAGGTAGGAGTATGAGATATGGGTCTGAACTTGATCTTCTTGGTGCATTAAGGAAGCCTCTTGAACCAGATTTCAATGAGGATGGTGATTAA 2046 0.4076 MVSVKSRSVRFHDDLEKEKLNEVEENQMEMATYEMSNQHKHVKDAKNKSSSNGKELSRVFSEDYDAEEILILDPRGPRVNIWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSLGLEVSLTIIRGELIIDSSKIASNYLSRDFWFDLVAALPLPQVLIWAVIPNLRGSEMIASRHILRLVSIFQYLLRLYLIYPLSSVIVKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACTLEFSHCRYHYLDCRSLGDPNRNSWLRSSNVSGLCDDNSAFFQFGIFADALTLEITSSKFLNKYYYCLWWGLRNLSSAGQNLLTSTHVPEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKQNVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCSPGTCIVRECDPVNEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKEINEVKEKENLMMMANVKYYGHDDSQYFSAPLQAPMGSSYSMYSGKLVGSLRKGRSMRYGSELDLLGALRKPLEPDFNEDGD 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01087 681 SUPERFAMILY cAMP-binding domain-like 375 567 IPR018490 -
Vifa3g01087 681 Gene3D - 82 369 - -
Vifa3g01087 681 FunFam Cyclic nucleotide-gated ion channel 1 443 561 - -
Vifa3g01087 681 ProSiteProfiles cAMP/cGMP binding motif profile. 445 530 IPR000595 -
Vifa3g01087 681 SUPERFAMILY Voltage-gated potassium channels 73 367 - -
Vifa3g01087 681 Gene3D Jelly Rolls 443 563 IPR014710 -
Vifa3g01087 681 SMART cnmp_10 445 576 IPR000595 -
Vifa3g01087 681 Gene3D Helix hairpin bin 373 436 - -
Vifa3g01087 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 123 621 - -
Vifa3g01087 681 Pfam Ion transport protein 81 371 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa3g01087 681 CDD CAP_ED 445 576 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01087 Vifa-Chr3 280647343 280650077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01087 52 679 Ion Channels AT2G28260 61.187 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01087 K05391 - gmx:100815543 1089.33