Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01086 ATGTCTACCTCTGCAACTTCCCTAGCCCTTCCCTCTCTCCGAACCAAAACTCCACAATGTTTCTCTTCACTCCCTTCGTTCTCACTCAACAAGGATTTCAAACCGTTTTCATCTGTCTCCCTTCGTAAAACGCTGTCTTTGAGTTACCGGTTCGTTTCCCGTGTTGCGGTTTCGTCGGAGTTTAAGCAGGAGGTGGATACTTTTGATGATGGAGATACAAGGAATTACTCTGCCAACCAGCGGCTGTTTGTTGGGAACCTTCCGTTCAGTGTTGATAGTGCTCAACTTGCAGAGATTTTTGAAAGTGCCGGGAACGTTGAGATGGTTGAGGTGATTTATGATAAGACTACAGGTAGAAGCAGGGGATTTGGGTTTGTTACTATGTCTTCTGCTGCTGAAGTTCAAGCTGCTGTTCAGCAGTTCAATGGTTATCTAGTGGAGGGAAGGGAATTGAGAGTGAATTCTGGACCAGCTCCTCCACCTCGTGAGAATTCTCGTTTTGGTGGTCCTCCAAGAGGTGGTTCATATAGCGAACACCGCGTTCACGTGGGTAATCTTTCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTCCAAGAACAAGGAAAGGTTATAGAGGCAAGGGTAGTCTATGATAGGGAAAGTGGAAGATCTAAAGGCTTTGGATTTGTGACTTACGGTAGTGCTGAAGAGGTCAACGGTGCTATTGAATTCTTAGATGGCGCGGACTTGAATGGCAGAGCTATCCGGGTCTCACCTGCCGAAAGTAGACCAAAGCGTGATTTTTGA 792 0.4646 MSTSATSLALPSLRTKTPQCFSSLPSFSLNKDFKPFSSVSLRKTLSLSYRFVSRVAVSSEFKQEVDTFDDGDTRNYSANQRLFVGNLPFSVDSAQLAEIFESAGNVEMVEVIYDKTTGRSRGFGFVTMSSAAEVQAAVQQFNGYLVEGRELRVNSGPAPPPRENSRFGGPPRGGSYSEHRVHVGNLSWGVDNLALESLFQEQGKVIEARVVYDRESGRSKGFGFVTYGSAEEVNGAIEFLDGADLNGRAIRVSPAESRPKRDF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01086 263 SUPERFAMILY RNA-binding domain, RBD 176 261 IPR035979 GO:0003676
Vifa3g01086 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 257 IPR000504 GO:0003723
Vifa3g01086 263 SUPERFAMILY RNA-binding domain, RBD 79 175 IPR035979 GO:0003676
Vifa3g01086 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Vifa3g01086 263 MobiDBLite consensus disorder prediction 152 173 - -
Vifa3g01086 263 Gene3D - 56 177 IPR012677 -
Vifa3g01086 263 Gene3D - 178 263 IPR012677 -
Vifa3g01086 263 SMART rrm1_1 180 253 IPR000504 GO:0003723
Vifa3g01086 263 SMART rrm1_1 81 154 IPR000504 GO:0003723
Vifa3g01086 263 CDD RRM2_NsCP33_like 180 255 - -
Vifa3g01086 263 PANTHER OS02G0815200 PROTEIN 22 259 - -
Vifa3g01086 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Vifa3g01086 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 251 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01086 Vifa-Chr3 280518548 280520336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01086 82 262 Eukaryotic Initiation Factors Gene Family AT1G49760 33.702 5.33e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01086 - - cave:132192120 317.39