Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01084 ATGGAGGGAGTTACTACCAATGGCCACGTTGAAGAAACTTTTTGTTTGAGCAAAAATGGCGGTGTTGTTGCTGGGGCTGATCCACTCAATTGGGGTGCGGCAGCGGAGGCGTTGATGGGGAGTCATTTGGATGAGGTGAAGCGTATGGTTGCCGAGTATCGTAAACCGATCGTTAAAATCGGCGGTGAGACGCTCACCATTGGTCAGGTGGCAGGAATTGCTTCTCACGATAGTGGTGTCCGGGTGGAGCTTTCCGAGTCGGCGAGGGCTGGCGTTAAAGCGAGTAGTGATTGGGTGATGGACAGCATGAATAAAGGGACTGACAGTTACGGTGTTACCACCGGTTTTGGTGCTACTTCTCACCGGAGAACCAAACAAGGTGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAATCTAATTGTACATTACCACACACTGCAACAAGAGCTGCAATGCTTGTTAGAATCAACACACTTCTTCAAGGATACTCAGGAATCAGATTTGAAATCCTGGAAGCAATCACAAAGTTTCTAAACAACAACATTACTCCATGTTTACCGCTTCGCGGAACAATCACAGCTTCTGGTGACCTTGTTCCACTTTCATACATTGCTGGTTTGTTAACCGGGAGGCCGAACTCGAAGGCCGTTGGACCGTCTGGCGAGATTCTTAATGCTAAAGAAGCATTTCAGCTTGCAGGTATTGGTTCCGAGTTCTTTGAGTTGCAACCAAAAGAAGGTCTTGCTCTTGTTAACGGAACTGCTGTTGGTTCTGGTTTGGCTTCTATTGTTCTGTTTGAAGCAAATGTGCTGGCTGTTTTGTCTGAAGTTATGTCAGCGATTTTCGCGGAAGTTATGCAAGGAAAACCGGAGTTTACCGATCATTTGACTCATAAGTTGAAGCATCATCCTGGTCAGATTGAAGCTGCTGCTATCATGGAACATATTTTGGATGGAAGTGCTTATGTTAAAGCAGATAAGAAGTTACATGAGATGGATCCTTTACAAAAACCGAAACAAGATCGTTACGCACTTAGAACTTCGCCTCAATGGCTTGGTCCATTGATTGAAGTTATAAGATTCTCAACCAAGTCAATTGAAAGAGAGATTAACTCTGTCAACGATAACCCTTTGATCGATGTATCGAGGAACATGGCGTTACACGGTGGTAATTTTCAAGGAACGCCTATTGGAGTTTCGATGGATAACACGCGTTTAGCTCTTGCTTCAATTGGTAAACTCATGTTCGCGCAATTCTCTGAACTTGTTAACGATTTTTACAACAATGGTTTGCCTTCGAATCTCTCTGGTGGTAGGAATCCAAGTTTGGATTACGGTTTCAAAGGCTCTGAAATCGCTATGGCTTCTTATTGTTCCGAGATACAATATCTTGCTAACCCTGTCACCACTCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTTAACTCTCTCGGTTTGATTTCTTCGAGAAAAACACAGGAGGCTATTGAGATTCTAAAGCTTATGTCTTCTACTTACTTGATCGCGCTTTGTCAAGCAATTGACTTAAGGCATTTGGAGGAGAATCTGAGAAATGCTGTGAAGAACACGGTGAGTCAAGTTGCTAAGAGAACACTCACAACCGGTGTCAACGGAGAGCTTCATCCGTCTAGATTCTGCGAGAAAGATTTGCTCAAAGTCGTTGATAGAGAGTACGTATTCGCCTATGCTGATGATCCTTGTCTAGCCACATACCCTTTGATGCAAAAGTTGAGACAAGTCCTTGTGGATCACGCATTGGTGAATGTGGAAGGCGAGAAGAATTCAAACACGTCGATTTTTCAGAAGATTGCAACTTTCGAAGACGAGTTGAAGGCTATCTTACCTAAGGAAGTTGAAAGTGTAAGAGCTGCATACGAAAACGGACAAAGTGGAATTCCAAACAAGATCAAGGAATGTAGGTCTTATCCCTTGTACAAGTTTGTCCGAGAGGAATTGGGGACCGCGTTGTTGACAGGCGAAAAGGCGATTTCCCCGGGCGAAGAGTGTGACAAAGTATTCACAGCTATGTGTCAAGGTAAAATTGTTGATCCTCTTATGAAATGTCTTGGAGAGTGGAATGGTGCACCTCTTCCAATTTGTTAA 2157 0.4386 MEGVTTNGHVEETFCLSKNGGVVAGADPLNWGAAAEALMGSHLDEVKRMVAEYRKPIVKIGGETLTIGQVAGIASHDSGVRVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKFLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFQLAGIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKADKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNMALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGSEIAMASYCSEIQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTQEAIEILKLMSSTYLIALCQAIDLRHLEENLRNAVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCLATYPLMQKLRQVLVDHALVNVEGEKNSNTSIFQKIATFEDELKAILPKEVESVRAAYENGQSGIPNKIKECRSYPLYKFVREELGTALLTGEKAISPGEECDKVFTAMCQGKIVDPLMKCLGEWNGAPLPIC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01084 718 CDD PAL-HAL 63 528 IPR001106 -
Vifa3g01084 718 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Vifa3g01084 718 NCBIfam phenylalanine ammonia-lyase 27 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vifa3g01084 718 Gene3D - 531 652 IPR023144 -
Vifa3g01084 718 SUPERFAMILY L-aspartase-like 27 718 IPR008948 GO:0003824
Vifa3g01084 718 Pfam Aromatic amino acid lyase 65 540 IPR001106 -
Vifa3g01084 718 FunFam Phenylalanine ammonia-lyase 531 652 - -
Vifa3g01084 718 Gene3D - 19 264 IPR024083 -
Vifa3g01084 718 FunFam Phenylalanine ammonia-lyase 265 571 - -
Vifa3g01084 718 Gene3D Fumarase/aspartase (Central domain) 265 713 - -
Vifa3g01084 718 FunFam Phenylalanine ammonia-lyase 18 264 - -
Vifa3g01084 718 PANTHER HISTIDINE AMMONIA-LYASE 20 718 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01084 Vifa-Chr3 279647076 279650879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01084 8 718 Monolignol Biosynthesis Gene Families AT2G37040 81.653 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01084 K10775 - gmx:100803857 1277.69