Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01080 ATGAAGTCAAGATTTTTGAGAGGGTGTATCAACAAATGCAAGAAAATGGGAAGCATAGTAAAAACATGTGCCACTTGTGAAGATTTTTGTGAAAGAGGCTTATGGTTATCTCTGCATGAGAGTTGCTCTATTCCAAGTGATGTTCCAAAGGGTCACATGGTTGTATATGTTGGTGAGAATCATAAGAGATATGTTATCAAAATTGCATTGCTTCATCACCCACTTTTCATAGCTTTGTTGGATCAAGCTCAAGAAGAGTATGATTTCGTTGCGGATTCAAAACTATGTATTCCTTGTGATGAACATCTTTTCCTCAATGTTCTTCGTTGTGCTGGTTCTCCACAGAATCAAGGGGTGTGTTTGTGTCTCTGA 372 0.3817 MKSRFLRGCINKCKKMGSIVKTCATCEDFCERGLWLSLHESCSIPSDVPKGHMVVYVGENHKRYVIKIALLHHPLFIALLDQAQEEYDFVADSKLCIPCDEHLFLNVLRCAGSPQNQGVCLCL 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01080 123 Pfam Auxin responsive protein 41 110 IPR003676 GO:0009733
Vifa3g01080 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01080 Vifa-Chr3 278759547 278759918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01080 10 113 Calmodulin-binding Proteins AT4G34750 39.450 2.10e-20 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01080 K14488 - gmx:100812927 210.305