Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01078 ATGATTTCTGGTAGTGGTGTTTGTGGATACAATAGCTTCTGCACTTTGGGACAGGATAAGAGACCAACGTGTCAGTGTCCAAAAAGTTACTCTCTAGTTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAAATGAGTAAAAGAAAGGATCTCTATGACTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCAAACAAGAATAATAATAGGGAAACGTTGGTTTTAGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGCCGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTATTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGAAATGGCACTTTGGCAAGTTTACTTTTCAATGTTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTAAACTTGCAATAGGAATAGCAAGGGGAATTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAAAACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGAGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTATTATTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1482 0.3785 MISGSGVCGYNSFCTLGQDKRPTCQCPKSYSLVNPDDPYGSCKPDFIQGCEEDEMSKRKDLYDFEVLINTDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNAVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMRNGTLASLLFNVDEKQKPSWKLRLKLAIGIARGIVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTKTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVEHWLRVTMRHWMTKKSIIEVQVPPYPSQISIQYSLI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01078 493 FunFam S-receptor-like serine/threonine-protein kinase 194 305 - -
Vifa3g01078 493 SUPERFAMILY Protein kinase-like (PK-like) 206 461 IPR011009 -
Vifa3g01078 493 Pfam Protein tyrosine and serine/threonine kinase 227 444 IPR001245 GO:0004672|GO:0006468
Vifa3g01078 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672|GO:0006468
Vifa3g01078 493 FunFam Putative receptor-like protein kinase 306 479 - -
Vifa3g01078 493 ProSiteProfiles Protein kinase domain profile. 225 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01078 493 ProSitePatterns Protein kinases ATP-binding region signature. 231 258 IPR017441 GO:0005524
Vifa3g01078 493 Gene3D Transferase(Phosphotransferase) domain 1 306 479 - -
Vifa3g01078 493 Gene3D Phosphorylase Kinase; domain 1 187 305 - -
Vifa3g01078 493 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 461 - -
Vifa3g01078 493 SMART serkin_6 225 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01078 Vifa-Chr3 278257917 278260346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01078 175 453 Receptor kinase-like Gene Family AT2G23950 41.892 5.12e-66 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g01078 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01078 - - gmx:100776632 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01335 6 464105507 464109380 Vifa3g01078 3 278257917 278260346 ECH
Vifa3g01078 3 278257917 278260346 Vifa3g01078 3 278257917 278260346 ECH